Detail information of GWHGAAEX000162/evm.TU.scaffold_0.307
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186683728|ref|YP_001866924.1| | 7.00E-142 | ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102] |
| KOG | KOG0351 | 2.00E-118 | ATP-dependent DNA helicase |
| nr | gi|672119006|ref|XP_008782729.1| | 0 | PREDICTED: mediator of RNA polymerase II transcription subunit 34-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9FT73|MED34_ARATH | 2.00E-103 | Mediator of RNA polymerase II transcription subunit 34 |
| trEMBL | tr|J3MP69|J3MP69_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G32010.1} |
| TAIR | HS5739524_2 | 2.00E-118 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 17408547 | 17462093 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000162
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 17 | 176 | 3.40E-21 |
| PF00271.30 | Helicase_C | 217 | 322 | 2.50E-20 |
| PF16124.4 | RecQ_Zn_bind | 335 | 395 | 1.40E-12 |
| PF09382.9 | RQC | 400 | 495 | 3.20E-19 |
| PF00570.22 | HRDC | 546 | 611 | 8.60E-16 |
| PF14493.5 | HTH_40 | 648 | 744 | 4.30E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03654 | recQ | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0006281 | Biological Process | DNA repair |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0044237 | Biological Process | cellular metabolic process |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0043138 | Molecular Function | 3'-5' DNA helicase activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.550 |
| SRR2545915 | Juvenile tuber | 12.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.220 |
| SRR5643514 | five period of Gastrodia elata | 9.520 | |
| SRR5643515 | five period of Gastrodia elata | 6.470 | |
| SRR5643524 | five period of Gastrodia elata | 6.100 | |
| SRR5643525 | five period of Gastrodia elata | 8.760 | |
| SRR5643528 | five period of Gastrodia elata | 8.170 | |
| SRR5643658 | five period of Gastrodia elata | 12.590 | |
| SRR5643659 | five period of Gastrodia elata | 6.300 | |
| SRR5643660 | five period of Gastrodia elata | 6.180 | |
| SRR5643661 | five period of Gastrodia elata | 5.160 | |
| SRR5643662 | five period of Gastrodia elata | 5.870 | |
| SRR5643663 | five period of Gastrodia elata | 6.710 | |
| SRR5643664 | five period of Gastrodia elata | 5.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.22 |
| Juven | Juvenile tuber | 8.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.76 | |
| Mother_Juven | Mother tuber of Juvenile | 5.82 |