Detail information of GWHGAAEX000165/evm.TU.scaffold_0.311
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|440684664|ref|YP_007159459.1| | 2.00E-68 | Cellulase [Anabaena cylindrica PCC 7122] |
| nr | gi|743843550|ref|XP_010938102.1| | 0 | PREDICTED: endoglucanase 9-like [Elaeis guineensis] |
| Swissprot | tr|P0C1U4|GUN9_ORYSJ | 0 | Endoglucanase 9 |
| trEMBL | tr|M0U0Z8|M0U0Z8_MUSAM | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
| TAIR | AT5G49720 | 0 | glycosyl hydrolase 9A1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 17608950 | 17615860 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000165
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 116 | 587 | 5.00E-121 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01179 | E3.2.1.4 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.790 |
| SRR2545915 | Juvenile tuber | 65.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 154.270 |
| SRR5643514 | five period of Gastrodia elata | 166.450 | |
| SRR5643515 | five period of Gastrodia elata | 176.930 | |
| SRR5643524 | five period of Gastrodia elata | 161.480 | |
| SRR5643525 | five period of Gastrodia elata | 462.590 | |
| SRR5643528 | five period of Gastrodia elata | 356.320 | |
| SRR5643658 | five period of Gastrodia elata | 531.160 | |
| SRR5643659 | five period of Gastrodia elata | 216.330 | |
| SRR5643660 | five period of Gastrodia elata | 213.480 | |
| SRR5643661 | five period of Gastrodia elata | 264.730 | |
| SRR5643662 | five period of Gastrodia elata | 203.540 | |
| SRR5643663 | five period of Gastrodia elata | 226.100 | |
| SRR5643664 | five period of Gastrodia elata | 148.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 115.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 122.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 140.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 94.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 75.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 65.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 134.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 100.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 220.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 209.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 163.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 163.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 122.85 |
| Juven | Juvenile tuber | 91.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 69.74 | |
| Mother_Juven | Mother tuber of Juvenile | 32.49 |