Gene detail

Detail information of GWHGAAEX000166/evm.TU.scaffold_0.312

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|296085121\|emb\|CBI28616.3\|	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q10LZ9\|C3H23_ORYSJ	2.00E-165	Zinc finger CCCH domain-containing protein 23
trEMBL	tr\|M0T2A5\|M0T2A5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P27800_001}
TAIR	AT3G51950	5.00E-127	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	17660328	17663706	-

Transcript Sequence
>GWHTAAEX000166 GGCGCCTTTAAAGCTGTTATGGAACTAATCCACAGTGTGACAGCGATGCGTGATGCGGCACAGCTACTAAATAGTATAGATTAATGTAATCAATTTAGATAAGCTCAGGTTTAAGAGTGGTTTAAATAGAATAGTTAAGAAAATCGAATGGCTACAGCGATGGCCACAGCACTGCCGCAGGCCTCAATAACAACGTAAACATCACCATTCGACCCTCAACAACGTAGACGACAAAGCTCTGTGTGGCCCACCCCCGTGGTTAATCATGCTTAGGCTGAAGGAATTTATCAGTAGAGATAGAGAGAGAGAGGGCGCGCACCTATGGCATTGACCTTGACCGGCTTCTGAGTGTGGAGGTAGCAGCAGAGGAGAGAGAGGTGCGAGTTCAGGTGTAGAGAGAGGGAGGGGGGGGGGGGAATGCGACCTATTTGAAGAGAGATCCAGATCTTCTTCGGCTTAGAGAGCCGACCGATGTAAAAGAAGAAAGCAAAATTTTTTGCTTTTCGTTTTCTTTTCTTCGCTTTCCCACTTGCTCTTTAACATCATCCCTCTTTCTTGGGCACTCGAGATAACGCAGGAAAGGCCATGGATGCGTACGAGGCGACGAAGATCGTGTTTTCGAGGATACAGAGCATAGATCCGGAGAACGCGGCGAAGATCATGGGGCTGCTGCTGATCCAAGAGCACGGGGAGAAGGAGATGATCAGGCTGGCCTTCGGCCCCGAATCCCTGCTTCAGTCGGTGGTTCTGAAAGCGCGCAAAGACCTGGGCTTTCTCCCGCCCTCGCCCTCCCAGCGCCCGGCTCCGCTCATCGTCTCGTCGGGAGAGGAGCTGATGGAGGAGCTGCAGCTGTCGTTCTTGAACGACGCAGCGGCGGGGGAGGAGCTCTTGCCGGCCTACGGGATTGGATGGGGCTCGCCCCTGTCTAATGGGGGGAATCAGAGTCAGCAGCGCAGGGGATGCTCTGTTTCGGACCTGTGCTTGGGGTCTGATCCTGCAGGGCTCGGTTGGAAGCCATGTCTGTACTTTGCGAGGGGGTACTGCAAGAACGGGACGAGCTGCCGCTTTCTTCACGGGGATGAGGAGAACGACCTGTTGATGCGGTCGAAGAGCCAGCGGCTCATGGCTTCGGCTTTTCCATACTCCCCTACAGGGGGGTCGTCTCTGCCGCAGTCGCCCTCTGGAGCTGGGAAAGGAATCGGCTTTCTTCTGCAGCAGCAGCAGCAGCAGAGTGAGAACCAAAGGGCGGCGGTGGCGGCAGCGGCGGCGGCTGCTGCTGCGTTGATGCTGGGAGCGGAGGATCCGCACAAGTATGCGGGAAGGGCGAGGATGGAAAGGAGCGATTTTTCGTGCATGATGAACCCTAGTTCAAGGCAGATCTACCTGACCTTTCCTGCGGACAGCACTTTTAGAGAGGAAGATGTCTCGAACTACTTCAGCATCTACGGACCGGTGCAGGACGTGCGCATCCCGTATCAGCAGAAGAGAATGTTTGGGTTCGTCACCTTCGTGTATCCTGAGACTGTGAAGCTCATCCTCGCCAAAGGCAATCCTCACTTCGTCTGCGACGCTCGAGTTCTGGTCAAGCCTTACAAGGAGAAGGGAAAAGTTCCCGACAAGTACAGGAAGCAGCAATGCGAAAGAGGGGATTTTTCAAGCTGTAACACGCCCACCAGTCTTGATTCCAGAGATCCCTTTGATCTTCAACAGCTCGGAAGCAGAATGCTTTATGCTGGGAGCAACCAGGATGCATTACTGAGGAGGAAACTGGAGGAGCAGCAAGAACTTCAGCAAGCCATTGAGTTCCAGCAGCGCAGATTCATGGGGCTTCAACTCCTTGATCTGAAGAGGAACTCAACTATTTCTGCTTCGGCAGCTGCTTCTCCTTCTCCATTTTCTATCTCAAATGTGCTCGCAAGTTCCAATTTAGAAGGAGAAAAAAGCCTGAAATCTGGGTCTGGAACTCCTGTTGCTGTTTCTCGCTCAGATCAGGAAGAGATGGAGACAAAGATGAGCCCCAAAGAAGATGGCCATTTCCCAGAAGGCTGCGCGGAGCACAATCTTCCGGACAGCCCATTTGCTTCTCCGACCAAGTCTTCCTTTGCAGCTATTGGTGATTCGTTCTCCCTTGTTTCTGAGGCCGAACCTCCAGCAGCAGCTGCTTCTTCGGCTCTTCTAGCTTCCACTCTGCTTCCTGCTTCTTCCACACTTGAGAGCATTGCTTCCTTTAAATCCTGTTTCTTTCAGATGCCGAGGTTCTCATCCGGCCCCGGAGCGGTGGGCATGTGAACCGGGATGCTGGAAGAGTTTTTTATTCTTATTTTCTGAACAACTAAAGAAAGAAAAATCTGGCACGAATTGAAAAGAGAGTGGTTGGCTAGTTGCAGAAATTGTTTAAGATTTGGGATCATAGTCCCCATCGTTTACTAT

Network for GWHGAAEX000166

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.23	zf-CCCH	144	164	1.60E-05
PF00076.21	RRM_1	275	319	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	66.910
SRP064423	SRR2545915	Juvenile tuber	63.850
SRP108465	SRR5643513	five period of Gastrodia elata	146.680
	SRR5643514	five period of Gastrodia elata	137.750
	SRR5643515	five period of Gastrodia elata	89.350
	SRR5643524	five period of Gastrodia elata	106.820
	SRR5643525	five period of Gastrodia elata	63.230
	SRR5643528	five period of Gastrodia elata	52.910
	SRR5643658	five period of Gastrodia elata	56.480
	SRR5643659	five period of Gastrodia elata	125.700
	SRR5643660	five period of Gastrodia elata	107.220
	SRR5643661	five period of Gastrodia elata	102.080
	SRR5643662	five period of Gastrodia elata	75.450
	SRR5643663	five period of Gastrodia elata	81.850
	SRR5643664	five period of Gastrodia elata	89.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	192.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	139.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	186.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	169.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	164.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	143.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	164.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	187.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	163.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	149.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	179.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	179.920
SRP279888	Gastro	Gastrodia elata tuber	104.15
	Juven	Juvenile tuber	278.26
	Mother_Gastro	Mother tuber of Gastrodia elata	65.31
	Mother_Juven	Mother tuber of Juvenile	98.99