Detail information of GWHGAAEX000176/evm.TU.scaffold_0.333


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743783031|ref|XP_010921301.1|2.31E-149PREDICTED: uncharacterized protein LOC105044912 isoform X2 [Elaeis guineensis]
trEMBLtr|J3LND7|J3LND7_ORYBR3.00E-131Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G25630.1}
TAIRAT5G182602.00E-23RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000141841694618433324+
Transcript Sequence

Network for GWHGAAEX000176

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.080
SRR2545915Juvenile tuber30.180
SRP108465SRR5643513five period of Gastrodia elata17.810
SRR5643514five period of Gastrodia elata19.900
SRR5643515five period of Gastrodia elata19.150
SRR5643524five period of Gastrodia elata19.220
SRR5643525five period of Gastrodia elata21.980
SRR5643528five period of Gastrodia elata20.350
SRR5643658five period of Gastrodia elata23.860
SRR5643659five period of Gastrodia elata18.440
SRR5643660five period of Gastrodia elata19.630
SRR5643661five period of Gastrodia elata18.800
SRR5643662five period of Gastrodia elata22.020
SRR5643663five period of Gastrodia elata20.670
SRR5643664five period of Gastrodia elata22.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.390
SRR6049655Rhizomagastrodiae_C368-T10_good_124.480
SRR6049656Rhizomagastrodiae_C368-T07_good_119.260
SRR6049657Rhizomagastrodiae_C368-T07_good_123.040
SRR6049658Rhizomagastrodiae_C368-T04_good_128.560
SRR6049659Rhizomagastrodiae_C368-T04_good_137.970
SRR6049660Rhizomagastrodiae_C368-T01_good_122.970
SRR6049661Rhizomagastrodiae_C368-T04_good_128.120
SRR6049662Rhizomagastrodiae_C368-T01_good_116.390
SRR6049663Rhizomagastrodiae_C368-T01_good_115.800
SRR6049664Rhizomagastrodiae_C368-T10_good_119.990
SRR6049665Rhizomagastrodiae_C368-T10_good_119.990
SRP279888GastroGastrodia elata tuber 30.35
JuvenJuvenile tuber26.13
Mother_GastroMother tuber of Gastrodia elata 25.36
Mother_JuvenMother tuber of Juvenile 27.05