Detail information of GWHGAAEX000178/evm.TU.scaffold_0.337
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307720288|ref|YP_003891428.1| | 8.00E-16 | ATPase P [Sulfurimonas autotrophica DSM 16294] |
| KOG | KOG0206 | 0 | P-type ATPase |
| nr | gi|743784085|ref|XP_010921567.1| | 0 | PREDICTED: phospholipid-transporting ATPase 1-like [Elaeis guineensis] |
| Swissprot | tr|P98204|ALA1_ARATH | 0 | Phospholipid-transporting ATPase 1 |
| trEMBL | tr|A0A061FX67|A0A061FX67_THECC | 0 | Aminophospholipid ATPase isoform 1 {ECO:0000313|EMBL:EOY19404.1} |
| TAIR | 7303318 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 18520698 | 18536038 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000178
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16209.4 | PhoLip_ATPase_N | 39 | 105 | 5.20E-24 |
| PF00122.19 | E1-E2_ATPase | 138 | 379 | 4.50E-06 |
| PF13246.5 | Cation_ATPase | 531 | 605 | 5.40E-08 |
| PF16212.4 | PhoLip_ATPase_C | 869 | 1063 | 3.70E-63 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015914 | Biological Process | phospholipid transport |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0140326 | Molecular Function | ATPase-coupled intramembrane lipid transporter activity |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.230 |
| SRR2545915 | Juvenile tuber | 7.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.080 |
| SRR5643514 | five period of Gastrodia elata | 8.440 | |
| SRR5643515 | five period of Gastrodia elata | 8.390 | |
| SRR5643524 | five period of Gastrodia elata | 9.180 | |
| SRR5643525 | five period of Gastrodia elata | 13.190 | |
| SRR5643528 | five period of Gastrodia elata | 10.150 | |
| SRR5643658 | five period of Gastrodia elata | 12.590 | |
| SRR5643659 | five period of Gastrodia elata | 5.580 | |
| SRR5643660 | five period of Gastrodia elata | 6.140 | |
| SRR5643661 | five period of Gastrodia elata | 6.280 | |
| SRR5643662 | five period of Gastrodia elata | 5.450 | |
| SRR5643663 | five period of Gastrodia elata | 6.180 | |
| SRR5643664 | five period of Gastrodia elata | 7.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.56 |
| Juven | Juvenile tuber | 8.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.03 | |
| Mother_Juven | Mother tuber of Juvenile | 12.75 |