Gene detail

Detail information of GWHGAAEX000183/evm.TU.scaffold_0.344

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743843710\|ref\|XP_010938143.1\|	1.76E-162	PREDICTED: uncharacterized protein LOC105057276 [Elaeis guineensis]
Swissprot	tr\|Q9SAK5\|APL_ARATH	3.00E-52	Myb family transcription factor APL
trEMBL	tr\|B9SHH4\|B9SHH4_RICCO	4.00E-143	Transcription factor, putative {ECO:0000313\|EMBL:EEF36933.1}
TAIR	AT3G04030	2.00E-110	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	18841665	18844901	-

Transcript Sequence
>GWHTAAEX000183 CCTAAAGCAACAAGGGCATAATCTCTTTTCTGAATGGTGAAAAGATTAGATTGAGTCTGGCGTTTTGTTCCAAAGATTCTAGATGCTCTAAAAACTGCCCTATATAGATTACATAGGAGAAACACCTCACAACCATGAGAAGAGGTTGAGCCATTCCACAGCATGACGATCAAGATATGCTAAGGTATTAGCTTTTCATAAGCGGTTGTAAGCCAGCCCAGAAGTAGAAAGACCTATCATAGTGAGCAAATTTTTAAGTACAAAAGAGCAAAAAAATCATCATTGAGAAAGAAATGTATCATCATCTGAACCACAACAGGAACATCATGTCTTCTAGGGCATCCTTTCCTTCAGAAAGGAATTTGTTTCTACAGGCAGGAAATGGTCCAGGAGAATCGGGATTGGTTCTCTCAACTGATGCCAAGCCCAGGCTAAAGTGGACTCCTGAGCTCCACGAGCGATTTGTAGAGGCAGTGAATCAACTGGGTGGAGCAGAAAAGGCCACACCAAAAACAGTTATGAGGCTTATGGGAATTCAAGGACTAACTTTGTACCACCTTAAAAGCCACCTTCAGAAGTACCGACTCAGTAAGAACCTGCAAGTTCAAACTACTGGAGCAACTTCAAAGAACGTGATAGTCCCAACAGCAACATCAGATAGAACATCGGGATGTAACGGTTCCTTGGTTAATAACGTCAATGTCGGCCCCCATGGCAACAAAACGATGCACATAAATGAGGCATTGCAGATGCAAATGGAGGTGCAGCGAAGGATACACGAGCAACTTGAGGTGCAAAGGCACTTACAAAGACGGATTGAAGCTCAGGGTAAATACTTACAGTCAGTGCTGGAAAAAGCTCAAGAGACTCTTGGGAAGCAGAATTCAGGTTCAGCAGGCCTAGAAACTGCTAAAATACAGCTCTCAGAACTAGTCTCAAAGGTTTCAAATGAATGTTTCTCCAGTGCATTTCCAGGATTAGAAGGAACTCATGGTTCACATAAGCAGCAAGAACATGCCGTCCAAAATGCTGATTGCTCAATGGACAGTTGCTTAACCACATGTGAAGGATCACAAAAGGACCAAGTAATGCATAATCCAAATATGCTACCTGGAGCTTATCTTGGCAATTTATCACTAGAAACACAATCAATGCACGAAGGTGCTAGGCTTGAACAAATTCAATCTGGATGGTGTGAAGATATCAATGGATATAGAATGTTTTCTCAAACAAGGGCGAATGATTCAATACACCGCACTGTGCCTGTCTCAAGAGGTTCCAGTATCGTATCAATAAGCAAAACAAACCAAACAGACTTAACAGAAAGCAGTAACATTTCTGGGGCATATTGCATGCGAGGTGATGAGCACAATTCTTACCTTGAACATGCGCGCAACAAAAGATATGCCATTCAACAAAAAAGCTCGAGGGATTTGAGTGAGTTTGAGATCCCATGTACAACAGCACAATTGGATTTAAATTCTTGTGATGATTACAATGCTGCTAACAACTGCAATGGCTTTGATCTAAATGGCTTCAGCTGGAGCTAGAATATGGAACCTAACAGCTAATTACACCCATGGACATGCAGCTGCGGATACTTTCATGATATTAGCACTTGTGATATCCCATTTTCCGGTTATTTTGATTTTTATCAAAATTTCAAGCATAATATTTTGAGTATCTCATTGTGCAAGTAATTTCTTAGTCCGAGATTCTCTGATAAGAATGAGAAAAGCGTTTCAAGGCCATACATAGTAAAACAAAATGTAGACTAACAAACTCGAATATGACAAACATTTCACTATATGTTTTTGACTTCTTACTAGGGCTATAGTTGTAAGAATATCATTAATTAGTATAGCTTCTACACTGAACTCTGATTCATAAAATCCTTGACAAGAATATGTGGATCATGAGATGCA

Network for GWHGAAEX000183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module14

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	46	97	3.90E-10
PF14379.5	Myb_CC_LHEQLE	145	192	1.40E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.550
SRP064423	SRR2545915	Juvenile tuber	1.030
SRP108465	SRR5643513	five period of Gastrodia elata	3.500
	SRR5643514	five period of Gastrodia elata	0.920
	SRR5643515	five period of Gastrodia elata	0.960
	SRR5643524	five period of Gastrodia elata	0.920
	SRR5643525	five period of Gastrodia elata	9.590
	SRR5643528	five period of Gastrodia elata	10.990
	SRR5643658	five period of Gastrodia elata	0.780
	SRR5643659	five period of Gastrodia elata	2.020
	SRR5643660	five period of Gastrodia elata	0.700
	SRR5643661	five period of Gastrodia elata	2.870
	SRR5643662	five period of Gastrodia elata	6.540
	SRR5643663	five period of Gastrodia elata	3.140
	SRR5643664	five period of Gastrodia elata	6.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.260
SRP279888	Gastro	Gastrodia elata tuber	5.54
	Juven	Juvenile tuber	0.35
	Mother_Gastro	Mother tuber of Gastrodia elata	6.52
	Mother_Juven	Mother tuber of Juvenile	0.14