Detail information of GWHGAAEX000187/evm.TU.scaffold_0.349
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2736 | 9.00E-145 | Presenilin |
| nr | gi|502107407|ref|XP_004493253.1| | 4.90E-155 | PREDICTED: presenilin-like protein At1g08700-like [Cicer arietinum] |
| Swissprot | tr|O64668|PSNA_ARATH | 3.00E-145 | Presenilin-like protein At1g08700 |
| trEMBL | tr|B9SY83|B9SY83_RICCO | 1.00E-154 | Presenilin {ECO:0000256|RuleBase:RU361148} |
| TAIR | AT1G08700 | 9.00E-145 | Presenilin-1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 19088776 | 19090466 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000187
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01080.16 | Presenilin | 20 | 422 | 3.70E-120 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04505 | PSEN1, PS1 | Wnt signaling pathway | map04310 |
| Notch signaling pathway | map04330 | ||
| Neurotrophin signaling pathway | map04722 | ||
| Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016485 | Biological Process | protein processing |
| GO:0004190 | Molecular Function | aspartic-type endopeptidase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.030 |
| SRR2545915 | Juvenile tuber | 8.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.110 |
| SRR5643514 | five period of Gastrodia elata | 9.080 | |
| SRR5643515 | five period of Gastrodia elata | 11.470 | |
| SRR5643524 | five period of Gastrodia elata | 9.770 | |
| SRR5643525 | five period of Gastrodia elata | 21.730 | |
| SRR5643528 | five period of Gastrodia elata | 17.220 | |
| SRR5643658 | five period of Gastrodia elata | 22.240 | |
| SRR5643659 | five period of Gastrodia elata | 15.290 | |
| SRR5643660 | five period of Gastrodia elata | 11.720 | |
| SRR5643661 | five period of Gastrodia elata | 13.670 | |
| SRR5643662 | five period of Gastrodia elata | 13.820 | |
| SRR5643663 | five period of Gastrodia elata | 12.450 | |
| SRR5643664 | five period of Gastrodia elata | 9.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.47 |
| Juven | Juvenile tuber | 8.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.47 | |
| Mother_Juven | Mother tuber of Juvenile | 14.76 |