Gene detail

Detail information of GWHGAAEX000188/evm.TU.scaffold_0.352

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|296085852\|emb\|CBI31176.3\|	3.49E-26	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9FYE2\|PKS4_ARATH	2.00E-17	Protein PHYTOCHROME KINASE SUBSTRATE 4
trEMBL	tr\|M0UAF2\|M0UAF2_MUSAM	1.00E-22	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP18930_001}
TAIR	AT5G04190	8.00E-17	phytochrome kinase substrate 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	19199829	19201259	+

Transcript Sequence
>GWHTAAEX000188 ATGCAGAACAGTTTATTTTAAAATGCAACATCTTTATCAATAATATTTAACAAAGCCGATTACCGGACACCTTAATTTGGTCAACCAAACAACTACTTTAATATAGCTTAGTTGCTAATTAGCTTTCCTCTTCGATAAATACTCCGAAGCCTGAAACAGGGCAGAGCACCCTCCGAATATTCCAAGTAATGAATTCCGAAGCAGAGCAGCGAACCAACACTCTGAGCAAGAGCAGGAAACAGGAATCCATGATTCCGAGCTTTGGCTCCGCTTCCGACCATCATAAAACGAATTTTTACCTCAAACAGCCACCCCAAAACCCCCTTCTCAGAGATTCCGATGATTCCGAGCTCAGCATCTTCAACGCCGAGCGTTACTACAGCGAGACCCAAGAATTTTCCAATGTCTTCCTTAAAAAGCTCACTCCGATCGCTGAAAGTCTCGACCTTTCTCCCAAAAGACGTTCCTTTCGCGCCACTCAGGCCGTTACTTCCGAAACCAGCTGGAACAGCCGAACCGGTCTTCTCAAGAACCCGCCCGGTTCGGTTTCCAGCCATAAAAAGGGCCGACGGCTCTTTTGCCTGACCTGCCCCTGTTCGTGCAAGAAATCCGTAGACGTCGAAAAAGACAGCCCCTCGGCTAAAAGTCAAGACTTGGTCAGTGCTCTGAATTCGGGCGGATTCTCTTTTCCCGTTATTGCGCCTGCAAGAGACTCCCTGGAGGGAATGCCTTCGCCTGTAGTTCGAAGGCTTCGGTCGCCTGTGGACGATGACTTGGCGAGCGACGCAAGTTCGGATCTTTTTGAAATCGAGAGCTTTTCGGCTCAGTGGTCAGGCGGAAATTTGCAGATGCGGCGGAGCGCGGAGGAGGAATTGTACCCGCCGAGCGAGGCGAGCGTGGAGTGGAGTGTGACAACGGCAGATGTGGACGACGGCCGGTTAGAACCGGTCGCCGGAGAGGGGAGGAAGAAGGAAGTGGCCGGCGGAGGGCTGCTCAGCTGCCGATCGGCCAGAGCGGCTCTCGCCGTGGTCCCGAACCGGAGGCGGTTCGGGCCGGAGGTACAGCGGCGGACCGGGGCGTCGGTTTTTGCGGTCGAGCCGGATCGGGTCGTGGGGTTGGCGAGATTGGGGACCGTCAGTGCGGTTCCGGATGGGTCGAGGTCGGTTCGTGTGAGCCGGTTGGTTCAGCCGATTGATGCAAGGGTTTGCTGAACCGGTTGTGCTGCTTTGTTGTTTTATTTTATTTTTTTTATCTCATCGTTTATTTTGTTTGTGCAGTTAACTGATCCGAATTTGCTGCTTCTTCTTATTGTAGTTCTATTGTATTCTAAGATTATTTTTTTGGCAATTTTTTTTTTCTTTTTGAACACTTCTGTTATTATTGTATTTTATTCTACTCAATAACATAACTCGAGCTAAGCTAAGTCTTCAC

Network for GWHGAAEX000188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.350
SRP064423	SRR2545915	Juvenile tuber	8.410
SRP108465	SRR5643513	five period of Gastrodia elata	23.410
	SRR5643514	five period of Gastrodia elata	17.840
	SRR5643515	five period of Gastrodia elata	16.260
	SRR5643524	five period of Gastrodia elata	23.620
	SRR5643525	five period of Gastrodia elata	3.820
	SRR5643528	five period of Gastrodia elata	3.280
	SRR5643658	five period of Gastrodia elata	4.800
	SRR5643659	five period of Gastrodia elata	10.420
	SRR5643660	five period of Gastrodia elata	4.850
	SRR5643661	five period of Gastrodia elata	6.360
	SRR5643662	five period of Gastrodia elata	9.490
	SRR5643663	five period of Gastrodia elata	9.160
	SRR5643664	five period of Gastrodia elata	5.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.630
SRP279888	Gastro	Gastrodia elata tuber	6.36
	Juven	Juvenile tuber	4.34
	Mother_Gastro	Mother tuber of Gastrodia elata	26.82
	Mother_Juven	Mother tuber of Juvenile	15.85