Detail information of GWHGAAEX000192/evm.TU.scaffold_0.356


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428320472|ref|YP_007118354.1|2.00E-169geranylgeranyl reductase [Oscillatoria nigro-viridis PCC 7112]
nrgi|731348483|ref|XP_010685508.1|0PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Beta vulgaris subsp. vulgaris]
Swissprottr|Q9CA67|CHLP_ARATH2.00E-170Geranylgeranyl diphosphate reductase, chloroplastic (Precursor)
trEMBLtr|M5WHT6|M5WHT6_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ08813.1}
TAIRAT1G744705.00E-170Pyridine nucleotide-disulphide oxidoreductase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000141938564119387074+
Transcript Sequence

Network for GWHGAAEX000192

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01494.18FAD_binding_31233335.60E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10960chlP, bchP Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0015979Biological Processphotosynthesis
GO:0055114Biological Processoxidation-reduction process
GO:0051188Biological Processcofactor biosynthetic process
GO:0045550Molecular Functiongeranylgeranyl reductase activity
GO:0071949Molecular FunctionFAD binding
GO:0016628Molecular Functionoxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.000
SRR2545915Juvenile tuber39.500
SRP108465SRR5643513five period of Gastrodia elata139.330
SRR5643514five period of Gastrodia elata112.070
SRR5643515five period of Gastrodia elata95.240
SRR5643524five period of Gastrodia elata103.930
SRR5643525five period of Gastrodia elata71.730
SRR5643528five period of Gastrodia elata61.550
SRR5643658five period of Gastrodia elata64.660
SRR5643659five period of Gastrodia elata111.740
SRR5643660five period of Gastrodia elata106.010
SRR5643661five period of Gastrodia elata107.310
SRR5643662five period of Gastrodia elata133.140
SRR5643663five period of Gastrodia elata111.120
SRR5643664five period of Gastrodia elata168.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1171.420
SRR6049655Rhizomagastrodiae_C368-T10_good_1137.090
SRR6049656Rhizomagastrodiae_C368-T07_good_1186.570
SRR6049657Rhizomagastrodiae_C368-T07_good_1172.230
SRR6049658Rhizomagastrodiae_C368-T04_good_1165.780
SRR6049659Rhizomagastrodiae_C368-T04_good_1154.570
SRR6049660Rhizomagastrodiae_C368-T01_good_1154.470
SRR6049661Rhizomagastrodiae_C368-T04_good_1202.270
SRR6049662Rhizomagastrodiae_C368-T01_good_1119.130
SRR6049663Rhizomagastrodiae_C368-T01_good_1121.990
SRR6049664Rhizomagastrodiae_C368-T10_good_1127.320
SRR6049665Rhizomagastrodiae_C368-T10_good_1127.320
SRP279888GastroGastrodia elata tuber 96.25
JuvenJuvenile tuber120.06
Mother_GastroMother tuber of Gastrodia elata 54.64
Mother_JuvenMother tuber of Juvenile 89.63