Detail information of GWHGAAEX000193/evm.TU.scaffold_0.357


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|170290521|ref|YP_001737337.1|4.00E-34small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
KOGKOG00701.00E-129GTP-binding ADP-ribosylation factor Arf1
nrgi|302757603|ref|XP_002962225.1|5.61E-130ARF family GTPase [Selaginella moellendorffii]
Swissprottr|P51823|ARF2_ORYSJ4.00E-131ADP-ribosylation factor 2
trEMBLtr|D8QSR7|D8QSR7_SELML2.00E-130ARF family GTPase {ECO:0000313|EMBL:EFJ37485.1}
TAIRAT1G106301.00E-129ADP-ribosylation factor A1F

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000141938714619395886-
Transcript Sequence

Network for GWHGAAEX000193

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00025.20Arf61771.10E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07937ARF1 Phospholipase D signaling pathway map04072
Endocytosismap04144

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.110
SRR2545915Juvenile tuber79.490
SRP108465SRR5643513five period of Gastrodia elata60.520
SRR5643514five period of Gastrodia elata50.620
SRR5643515five period of Gastrodia elata69.520
SRR5643524five period of Gastrodia elata51.470
SRR5643525five period of Gastrodia elata175.910
SRR5643528five period of Gastrodia elata222.120
SRR5643658five period of Gastrodia elata221.200
SRR5643659five period of Gastrodia elata81.120
SRR5643660five period of Gastrodia elata76.230
SRR5643661five period of Gastrodia elata85.760
SRR5643662five period of Gastrodia elata97.600
SRR5643663five period of Gastrodia elata98.720
SRR5643664five period of Gastrodia elata68.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_167.200
SRR6049655Rhizomagastrodiae_C368-T10_good_147.520
SRR6049656Rhizomagastrodiae_C368-T07_good_162.030
SRR6049657Rhizomagastrodiae_C368-T07_good_149.020
SRR6049658Rhizomagastrodiae_C368-T04_good_130.330
SRR6049659Rhizomagastrodiae_C368-T04_good_116.180
SRR6049660Rhizomagastrodiae_C368-T01_good_129.940
SRR6049661Rhizomagastrodiae_C368-T04_good_140.050
SRR6049662Rhizomagastrodiae_C368-T01_good_164.590
SRR6049663Rhizomagastrodiae_C368-T01_good_131.700
SRR6049664Rhizomagastrodiae_C368-T10_good_182.660
SRR6049665Rhizomagastrodiae_C368-T10_good_182.660
SRP279888GastroGastrodia elata tuber 73.77
JuvenJuvenile tuber31.13
Mother_GastroMother tuber of Gastrodia elata 40.45
Mother_JuvenMother tuber of Juvenile 58.20