Gene detail

Detail information of GWHGAAEX000197/evm.TU.scaffold_0.362

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|296273514\|ref\|YP_003656145.1\|	1.00E-08	RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
KOG	KOG0118	7.00E-111	FOG: RRM domain
nr	gi\|743862926\|ref\|XP_010943670.1\|	1.40E-134	PREDICTED: UBP1-associated protein 2A-like [Elaeis guineensis]
Swissprot	tr\|Q9LES2\|UBA2A_ARATH	2.00E-111	UBP1-associated protein 2A
trEMBL	tr\|A0A067JQZ6\|A0A067JQZ6_JATCU	3.00E-120	Uncharacterized protein {ECO:0000313\|EMBL:KDP21974.1}
TAIR	AT3G56860	7.00E-111	UBP1-associated protein 2A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	19481282	19498088	-

Transcript Sequence
>GWHTAAEX000197 CGTCGAAGCCCTTAACATTAAGACCAAGCGGAATGCCCGTCTCTGCACGACAGTTCAATAAAGCAAAACCCTACCAGATCGAAATCTGATACTTTGACAGATTGCGGCTATGGCGAAGAAAAGAAAGCTCGAGGTGAAGCAAAAGACTGCAGGCTCTTCTGAATCAGGCTCTACTGACGATAAATCAGCCAAAGGAACCGAAACCGCCTTACCTAGCGAAGTCCCAATCGAAGGATCCTCTGTTTCAAAGGTCGGCCTGCCTATCCAGGAAGATCAAGCCATCGATGAAGAATTCAAACCAATAGCTCCTAAAACATCAGATCCCTCACCGGATCTTCCCGAGTCCAGCGAACCCTCTAATACGAATGTCATATCCAGCGGTGATGTAGGCGAGGGCGACGATAACGATCCCGCTTATCTGGACAGGCTTCTTGAGCCTTTCTCAAAGGAACAGCTAATCTCACTCATTCGAGACGCTACTTTGAAGCATCCGGATCTGAAAACTTCCATCCGTCAGACTGCAGAAGTGGATCCCGCCCACAGGAAGGTATTTGTCCATGGCCTCGGCTGGAACACTACGGCAGAGACGCTCACTAATATTTTTAGCCAGTACGGAGAAATTGAGGATTGTAAGGCTGTCGTAGACAAGCTCACCGGGAAGTCCAAAGGTTACGGATTCATCCTTTTCAAGGACCGGAGCGGCGCTCAACGATCCTTAAAAGAGCCTCAGAAGAAAATAGGTAACAGGATGGCGTCTTGCCAACTTGCCTCGACTGGCCCTGTTTCTGCTCAACAACCAGCTTTGTCTGCGTCCGATTACACCCAGCGGAAGATCTATGTAAGTAACGTAGGACCTGATCTTGATCCTCAAAAAATTTTGCAATTTTATGCAAAGTACGGTGAGATCGAGGAGGGTCCTTTAGGTCTCGACAAGGCTACAGGAAAGTTCAGGGGATTCTGCCTCATCGTTTATAAGAGTGTTGAGGGTGCAAAGAAGGCATTGGAGGAACCACATAAGAACTTTGAAGGCCATATACTGCACTGCCAGAAGGCGATTGATGGACCGAAAGTTAACAAGATTGGGACTTTTCTTCCCCAAGTTGGTGCGCAGCATACAAACATTTATCATCACGGGCCTCAAGTTGGAAGGAGTGATAGTGCTGTTTTAATGGGTAGTATGCCTTCTTCTATTGGAGGACCAGGACATCTTATAGCTCCTCCTGCTGCAGGCATTGGGTTCAACCAACCAGGGATAGCCGTCAACAATGGAGGGCTTACCCTGAATCCTTCATATGGTAATCAGGTGGGTGGAGCTGGAAGTTTAACAAAGCCAGGTGTGATAACTGGCTATGGAGCACCGCAGATACTTGGAACTTATGGTGGTGCACGAACACAACAAGCCTTTGGTCACATTGGCGGTGTAGGATCTTACATGGGTTAGTAGATCCTGTTGAGTGCAATGCCAATTTAGTTCTGCCAAGGTGATTCTGGAGTTCCTGCTTATGCATCTATTGGAGATTCCCATTTTATGATTTTCAAACTGATGCAGTGATGCTAGCTATAAATTCCCAAGTTTTCATCTGTGTTGACTTAAATCTATTTTCAAAACTTGATCTTTTTAAACCTTGTAAAATCTATGGTACCTTTTGGACGAAACTATTTAGTTTCTTGTAGGGTGCTTCTGATACCCTTTTTTATTGTTGAAAGAATTTAATGAAATTTAAAAGCAAGTTGTTTGTTATTGCACCTAGATTTTGGTATTCTTCTACTGCCTCATTTCTAATTCTTATTTTGGTTATATTTTTCTCGTTCTAAACCTGTCAATTTGAAATTGTTTTTTTTTTAATACAAACTATTATGCTATAAAAAATCGTTGTTTCGGTTTTCATCCTAGCTTTGCTTCACACGATAGCTTGTTTTTCTGTATTTACTAGTTGCATTTTATTATCTAAAGGCTGATTGCAGTTGATGAAATTTTACACTCAGTTCTAACTCAAATGAGAAATGTTGTCTGTCCTAGTTTAGTCTATTGATCTCAATTGTATTAACCTTACCGAAAACATATTTTAATTTATGCAAATTATTTTTTCATTATGTGCATTATGAAATGTTGACAAGTTATCTGGGAAATTTTCTCTAGGTAACGTGACTGCTATTTTTCTGTGTTCATTCTTTTATCACTCATTATTATTTTTCTTGAAAGCGCGTGATGTACTCGATCAAAGATTCATTTTACTGGAAAAATAATTTGATTAGGCCATTCTTGTAAAAATTTGTTAGAATGTCTCTCAGTCTGACAGGTGCTTCAAATTTCATCAATATGCATATTGGAACAATTTTAACCGGATGTCGCAATATTGATAACATATGGAACAAATTTTTTGTCTGGATACTAAATTTGTTTCATTTTATCTTTTGTATGGTTTTTCTCAAAATATATACATTTAATGCTTTACAAAAATTTCAGCTCACACATTTCCACTCTTTAGTGCTAAAAAAATGCAGATTGCAGAGAGACTTTTTGTTGTTGTTTGACATAATGTGGCTGTAACCTCTGCAAGCTCATGCTATAATACTTTCACATATGTATTTGTAAAATTTTTAAAGCACATATAAATTATGGTAAAATTTCTTTTTACATGGCCCTTTTTTCCAACTTACTGGTTGAAACTCTTTTATCGCTCAAATGGCTGTCCACTAGTTTTATTTCGAGGCTGAATATGTCAGCTAAAGAATTGCTCTGTTTATATTTTTAGCAATTTTTATAGTTTTGCCACTGCTCCGAACTTGTAAAAACAAAAGTAACCCTTAATAGTATGATGACGGGAGAGCTCTAGAAGATATTTGTGCAATATATGATCCAGCCAGTGTGAATCTCTTAATTGTTTTTTTATTTTTATATTTTCTGCTTTCTAATTTTAAATATATGAGCCTAGACGGAATGGCGTCTCTTTTTATTTAATTGGTATTGTCATAGTTATCATTGAACTATATTTTTTTTTTTTTTACCTGAATAACGATTAGTAAAAACTATTGCCAAGCAAATGCCCACCCTTATATATCATATAATTGTTTTATAGCGCCTGACATAGCTTGGAATTGAAATAGACTGGCCCATATGACTGTTATTTACAAGACGTGGGGTATTATAATGAACTTGTGTCAGCTTGATCTGTGTTACAAGGCAAAAATGAACTTTGGCTTTGACGACAAGCTTTAGTGGTGGCAGCGAGCATGGAGAGATGATGGTTGGCTCAGGCAGTGAGATCCTACTGGAAAAATGGAGAGGTGGGCACACAATAGCCGCGATGGGCTGGAGGCAAAAATGCCCGGCTGTTTGGGCTTTCCATTTGTGCTTCAAATCAGGAGTCTAAATTTCACATGCAGCAGTATTATTTCTCAACAGGACCCAACTTCTTTCAAACGAGTCTTCTTTTAAATAAATGTTAGGTTGATGTATTTGATTTATGTAAATTTTAGATAACAATAATCTTGTGCTACATTTATGTACATTCTCTACTATATTTTAGTGTTAGTATGTTGCTTGAGGCTAGGTTGATAATATAAATAATGCTAATTTATCACCTGCACTTGATTTGTTTTGGTGACTAATGTGGTGTAGTGGTATTGTGCTGACTATCCATGAATCAATTAACTTGGTGATTCTAGAG

Network for GWHGAAEX000197

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	147	213	2.20E-14
PF00076.21	RRM_1	242	310	1.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.500
SRP064423	SRR2545915	Juvenile tuber	60.270
SRP108465	SRR5643513	five period of Gastrodia elata	47.240
	SRR5643514	five period of Gastrodia elata	46.380
	SRR5643515	five period of Gastrodia elata	49.240
	SRR5643524	five period of Gastrodia elata	47.530
	SRR5643525	five period of Gastrodia elata	45.870
	SRR5643528	five period of Gastrodia elata	45.120
	SRR5643658	five period of Gastrodia elata	53.550
	SRR5643659	five period of Gastrodia elata	64.160
	SRR5643660	five period of Gastrodia elata	69.430
	SRR5643661	five period of Gastrodia elata	66.090
	SRR5643662	five period of Gastrodia elata	75.820
	SRR5643663	five period of Gastrodia elata	72.670
	SRR5643664	five period of Gastrodia elata	77.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	49.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	52.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.210
SRP279888	Gastro	Gastrodia elata tuber	66.19
	Juven	Juvenile tuber	48.56
	Mother_Gastro	Mother tuber of Gastrodia elata	48.00
	Mother_Juven	Mother tuber of Juvenile	52.19