Gene detail

Detail information of GWHGAAEX000198/evm.TU.scaffold_0.363

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2590	5.00E-147	RNA-binding protein LARP/SRO9 and related La domain proteins
nr	gi\|743861405\|ref\|XP_010943269.1\|	0	PREDICTED: la-related protein 1A-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q940X9\|LRP1A_ARATH	5.00E-154	La-related protein 1A
trEMBL	tr\|M0TXM3\|M0TXM3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P05140_001}
TAIR	AT5G21160	5.00E-147	LA RNA-binding protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	19579041	19598015	+

Transcript Sequence
>GWHTAAEX000198 CTCCTGTTTTTTTCCCCGGGTCATTTTCCCTTCCAAAAACCCTAAATCCCGCCTTCCACCTTTTACAAAACCCTAATTTAATACCGTGATCCGCTCGATGATAAAGATGACGACGAATTCTACGATGTCCTAGACATCCGCGCGAGGGTCGAGTGGAATCTAGACCCCTTGATGTGAAGAGAATCCTGCTGTGTTCGGATCGACGTCAAGAAAGGCTTCCTAATACCGCGGCGATGGAGAACGGAGCCGCTGTTGCCGTTACTTGCTTTCCGGTTGGCACGGAGGACGGCTTTGTTTCCGGAAAGGAGGAGAGAAAGAAGGGAAAAGGCGGGTCAAGGTCGGCTTGGAAGAAGCCGATGTCGTCACCGTCGGTTTCACCTGTGGCGGTAGAGGCGAGAAAGTCGGAGAGCCAACTAATTGGTGCAGATACGTGGCCACCTCTCGGGGATATCAAGCCGCAAGGAACTGCTGAATTGAGCGAAGGGCTGGCAGCCACGCCTCAGGTTGCGGCAACTAATGCTGGCCCTATACCGAGAAGTGGACCGCCATCCCTCCATCCTCTCAACATTCAGGGATCAGCTGCCCAACGAAGGCCTGATGGATTTGGAAGTGGCAATTCTTCAAACAAACAACCGCCTGTACACCCTCACAAAGCTGTCCCTAGGCGGAATGGCCCCGCAAATGGACCGATGCCATTTCCTGGTCCTTTTCCATTTCCCCAGCAGCTAGTTCCACCTATGTCATATCCTATTGCACCTCCATCTCTCATTGTCCCAGAATACACTTATCAGGCATTTCCTCCACCTTTTGCAAATGAACACCGCATTTTAAAATCGGGAGTTGATGTTCCATTGCCACCGTTTGTTCGAAACAATCAAACTGGTGGGATTGAGAACAATAGAAATTTTCAGCCACCACCACGAGGAGATTTCAATGCCTGGCGCCCCCATAATACTAACTTTGTTTACCGTCCAAATAATGGGCAAGATCCTACAGGTCGTTTTAGCCAAGCATGGCGAACACAACGGCCTTTTAGTCCAAGAGACAACATGAATATGCCCCCGAATATTGGTCCAAGGGCATTTGTCAGACCAGTTCCGCCTTATTTTGGCCCATCATCTGGTTTTATTGGTGGGCCTGGATTTCATGGTGCTCCTCATCCTGTTTGTTTTTTCCCCACTGGCCCTGTAGATTTTAGCAGAGGCCCTCATTTAATTTCATTACTATCACCATCGCCACCTCCTCATCCTCCTGTTGCTGCTGCTGTTACTTTTGTGCCACAAGAGGAATCTACTATAAGGGATAATATAGTAAAGCAAATCGAATATTATTTTAGTGATGAGAATTTACAGAAGGATGCCTTTCTGCTGTCCCTTCTGGATGAGCAAGGATGGGTCTCTATATCGAGAATTGCAGACTTCAATAGGGTTAAAAAAATGACAACCAGCATACCCTTGATTTTGGATGCCTTACAAAACTCCAACCTTATAGAAATTCAAGATGAGAAGATTCGACGAAATGACTGGTCAAAATGGGTTTCTGGATCGAATTCTATGTCTTCCGATGCTAAAGTCATGATCAACATGGATGAAACTGTGAAGGACAATGATCATGGAGGGGATATGACTAATGAGAGTAATGGTTTGCTAGGAACTGGTAATGACGATTATAATTCCGTGCTTTCAGCGAATGGCCATTCTAAGGAAGAAATTAATGATATAAGTTCCGTAAGTGATACTGTTGAAGGTCAGCCTGGCTGTGAGCTATTTCAATGCACTGGATCGCAGCAAATATCTAGCACTTTTATTGGTGCTAATTTTGAAGACAAGGATGAGAGGGCAGTTGCAGAAGAGCGAAACATGTCAAATCTTGGTAGCTCATCAATTAATTATGACAACTTGTCTCCTTGTTTTACTGGGGATCAGATTACGTTTTTACTTGATGAAGAAATGGAATTAGAACACAAAGCAATTCAGAAGGACCATTGCCCTTTACAAAAGAGGATTGACGTTGAGGAAGATGAACTGGATGTTAATGATGAAGATGTTCAGAGGCTCATTATTGTCACTCAGGTTAAGGATATCAGGATGAACAAAGATGAAAGGCATGGTTTGACAAAAACAGAGCCCATGTCAAATGAACATGCCACAACAATGAATGATGGACTCTATTTTTATGAGCAAGAAGTTGAGGGCGCACAATCTGCCAGCCGGAAGAACAATAATAACATCTCAAGGGGTGATGCTAAAGAACCCGATTCTAAGCACTCTCATTGCCACGTGCAGTCCTCTTCCCAGCCCTTAAAAGTCAATGTGAACATCTACGGAAACAATGCCACAGAAGAGTCAGGAGGACCTGCTAACAACTCCCGAGGCAGCAGGAGGAACAAAGGCTGTGGCGGCAGTGGCAAGTCTCACCCATCGTACAAACAGCAGCAGCACTTATTTCCCAGCAGCTATAAGCTCTACGGTGGCGGACGCAATCGCCATGGCATTGCTTCAGAAAGCCCGCCCAGCGCTTCGGTTGGATTTTTCTTCGGCTCTACCCCGCCCGAAAATTCTGGGTTCGTGCAATCAAAATTAAGCAGCTCTCCCCATGGAAACCTGCAGATCACCGGAAGCAGCCCCCCTGCAGGTTCCAACCCGAAATCTTTCCCTCATCCTAGCCATCAACTGCTTGAGGAGAACGGGTTCAAACATCAAAAGTACCATAAGTTCCACAAGCGCTGTCTCAACGAACGAAAAAAGCTGGGGATTGGTTGCAGCGAGGAGATGAACACGCTGTACCGGTTCTGGTCGTACTTCCTGAGGGACATGTTTCATGACAGCATGTACAATGAGTTCTGCAGGCTTGCGCTGGAAGACGCGGCCGCTAAGTATAATTATGGCCTCGAATGCCTCTTCCGATTCTACAGTTATGGCTTAGAGAAACAGTTCCGGGAAGATTTGTATGAAGCTTTTGAGCGGCTCACTCTGGAGTTCTATCGCAAGGGCAATCTCTACGGGCTCGAAAAATATTGGGCATTCCACCGCTATCGGGACCAGAAGAAGCCCATAAAGATGTGCCCCGAATTGGACAGGCTGCTCAGGGAAGAATACCGAACACTTGAAGATTTCAGGGCCAGAGACAAGGCTGCTGCTGCAGCGGAGGCTCCTTCGCTGATCAACTGAGAGAGGAATTGTGTTAATAGCAAAATATTAATAATGTCATTTGTATTAAGAGTGGAGGTAAGGGGGAAAATTTTGCTGTGTTGGGAAAAGAGAGAGAGAGAGAGATTTAGTGCGGGTACCGTGCAGTTTTTTTTTTTTAATTTGTTCCCTGCTAAATGTGGTTGGTATTTGTTGGCCGGAAGAGGAGGAATTGTTTTGTTTCTTCAAGTGCTAAATCTGTACATAGTTTAGGCAAAGTGATGCACAAAAAAAAAAAAAACTCTTAAATAAAAAAAAATAATGTGTATTCGGAAATGTAGAAATTGGTTAATAATATATATAGTATGCTTAGATTTAGGTCATCCTATTTTCTTCTGCATCTTTATTATCAGCTACTTTCTTTATACAAGTATGGGATGCCTGTG

Network for GWHGAAEX000198

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05383.16	La	359	414	4.10E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	76.210
SRP064423	SRR2545915	Juvenile tuber	74.670
SRP108465	SRR5643513	five period of Gastrodia elata	55.170
	SRR5643514	five period of Gastrodia elata	44.660
	SRR5643515	five period of Gastrodia elata	44.680
	SRR5643524	five period of Gastrodia elata	43.460
	SRR5643525	five period of Gastrodia elata	47.770
	SRR5643528	five period of Gastrodia elata	42.620
	SRR5643658	five period of Gastrodia elata	29.480
	SRR5643659	five period of Gastrodia elata	78.880
	SRR5643660	five period of Gastrodia elata	80.430
	SRR5643661	five period of Gastrodia elata	83.840
	SRR5643662	five period of Gastrodia elata	80.260
	SRR5643663	five period of Gastrodia elata	75.010
	SRR5643664	five period of Gastrodia elata	84.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	62.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	62.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	58.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.280
SRP279888	Gastro	Gastrodia elata tuber	72.60
	Juven	Juvenile tuber	52.98
	Mother_Gastro	Mother tuber of Gastrodia elata	40.59
	Mother_Juven	Mother tuber of Juvenile	47.87