Detail information of GWHGAAEX000199/evm.TU.scaffold_0.364
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1041 | 0 | Translation initiation factor 2C (eIF-2C) and related proteins |
| nr | gi|672170566|ref|XP_008805343.1| | 0 | PREDICTED: protein argonaute 4B-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q0JF58|AGO4B_ORYSJ | 0 | Protein argonaute 4B |
| trEMBL | tr|B8AUX7|B8AUX7_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EEC76718.1} |
| TAIR | AT2G27040 | 0 | Argonaute family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 19598672 | 19630218 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000199
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16486.4 | ArgoN | 60 | 221 | 3.10E-30 |
| PF08699.9 | ArgoL1 | 233 | 279 | 2.50E-17 |
| PF02170.21 | PAZ | 287 | 412 | 5.50E-23 |
| PF16488.4 | ArgoL2 | 422 | 466 | 2.00E-11 |
| PF16487.4 | ArgoMid | 476 | 556 | 4.80E-08 |
| PF02171.16 | Piwi | 566 | 873 | 1.10E-98 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11593 | ELF2C, AGO | Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.350 |
| SRR2545915 | Juvenile tuber | 5.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.820 |
| SRR5643514 | five period of Gastrodia elata | 20.570 | |
| SRR5643515 | five period of Gastrodia elata | 17.040 | |
| SRR5643524 | five period of Gastrodia elata | 18.240 | |
| SRR5643525 | five period of Gastrodia elata | 0.230 | |
| SRR5643528 | five period of Gastrodia elata | 0.260 | |
| SRR5643658 | five period of Gastrodia elata | 0.270 | |
| SRR5643659 | five period of Gastrodia elata | 7.380 | |
| SRR5643660 | five period of Gastrodia elata | 4.840 | |
| SRR5643661 | five period of Gastrodia elata | 7.640 | |
| SRR5643662 | five period of Gastrodia elata | 3.710 | |
| SRR5643663 | five period of Gastrodia elata | 3.820 | |
| SRR5643664 | five period of Gastrodia elata | 3.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.61 |
| Juven | Juvenile tuber | 16.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.73 | |
| Mother_Juven | Mother tuber of Juvenile | 7.44 |