Gene detail

Detail information of GWHGAAEX000204/evm.TU.scaffold_0.370

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743789917\|ref\|XP_010923035.1\|	0	PREDICTED: MAR-binding filament-like protein 1 [Elaeis guineensis]
trEMBL	tr\|M0SML8\|M0SML8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P10010_001}
TAIR	AT3G55060	2.00E-104	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	19728967	19768074	-

Transcript Sequence
>GWHTAAEX000204 GTTTTACTGCACACCGGCATTGGAAAATCCTAAATCGTCGCCGATGCGTTTAAAAATTTGCATGTTGCACGATTTTGGCTAAAGAAAATCCCTAAACTGCGAGTTGCTCGCCCTCGCCGAAAGTATCGAACCTCTCTTCGTCAATAGGATTTTTCCCTTTTTGGCTGAGTTTCTCTTCATTCGTCCATTCTTTACTTCTTCACCGGAGTAGTTTTAGCATTGGTGACCGGTTTAACTCATGAATGAATCTTCTCCGGTTGTGCTCTACATCGTGATAATTTAATAACTTTGCATTAGAAGCCAAGGATGAGGAAGTTCTTTTCTTTCAGATCTTCAAATAGTAGTGGAAATGACAGTATTGCACCTTCAGAGCTGAGCAAAGGCAGGAAAAAGCTCAATTTGGGGGTTACTGAGGCGATCAATTCTAAAATTTCTGCTCAGCAGAAGTTTCCTGGTGTTTTTCTTACTCCAGAAGACAATGTTCTCAAACCACTAAATGAAAATTTGGAAGATGAGACTTCTAATCCGTATCTGCGAAGGAGCCTATCATTTACATCTGCAGCCACTTGCAATCATTCAAATGAGAGATGTTTCACTCCTTCAAGTGATCAGAGCAGAATGACTGCTTGTCGTGATAATGATCAACGTGTAGGCCGATACCGTCTTCGCCATGACTTACTTACTCCAGATAGATATTCAGGAGATGAAAGAGAGAATTTGCAGTTATATGGAATTGAGAAACCAAATTCTTCGTGTACTTCAGGTGTTCAGCAAAATTCTTCAGATTCCAACTCAGTTTGCAGTTCTCCAGTAATACCTTTAAGATGTAGAGCAACTCGTTCATCCCAGATTTCATCTCAGAATGCTGTTCTTGACCTCTACATTGATGGAGAACATGAGGCTTCCAAGGAAAAAAAAATTCCCAAAAAATGCGCTTCTGAAAATGATGAAGATTGTAAAATAGCTGAAAAAAATAAAATTTCTATTATAGGAAAGCCACCACGAGGTTTGTGTACAGTACCAACATCACCCCATTTTAGTACAGAGAATCATCGATCATACTCATTTAGAGAGTTCAGAGATAAGCATTTTGATCTATCTGGTAGAGAATGGACAAGTAATGATCTCAAGCCTGCATTCCAGCCAAAGTACTTGGAAAACAACATTGACAGGACATGCGCATTTCATGGGAAATCTATTTTTAATGACTCTCAAACAAATGCTTCTACCGAGGATATATACCAGCACTTGTCAGATGGGAACCAAACTATGAACTCAGATGATGCAGCTCAAGGGTGTTTTTATGTACCTTTTGGATTCCAAAGGAAGGATTGTTTCTCATGGAGAGGGTCCAAGGCAACTGAGAATGATGAGCTGGTAAACACTAAGCATCAAGAGCATGACACCAATGAAAACTTGCTTAACAAGTTGAAAGACTTGGAGGAACGATACTGTTTGCTACTCGAAGAAGGTGCCGAGCCTGAAAAGATTCATCATGGGAGTTTAAGTGAATCTTCATTACTTCAAAATGTGCGGATTATCAAAGAAGACCAGAGATATTTGGCTGCTGAACTCTCTTTGCAAATAAGGAGTCGGCTCGCAGAGAGGTCTTTAGCAATTGAACATTTTGAGCAGTCAAAGTTGGAGCTGAGTGCCCGAACAAGAAGGCTGGAAAAGGAAAAGAATGAATTGCAGATGTCCTTGGAATCTGAGCTTGACAGAAGGAATAGCGATTGGTCATTAAAGCTGTCGAAGATTCAAGCTGAAGAGCAGAGGCTACGCGAACGTGTGAGGGAACTCGCCGAACATAATGTATCGCTCCAAAAGGAAATTTCCTCTCTTCAAGGGAGTGAACTAGAGAGTAGGACTTGTACTTTGAACATTGAGAGACAGCTGAATGAGAGCAAAGCAAGCCAAGGCGAGCTGAAAGCAGAAAATTTCAATCTTCGTCAAGCATTGATGGAACTGCAGGAGCGCTGCAGTAGTGCCGAGGAGCAACGAGGACACATCAAAAGCAGCTTAAAGGAGATGGAGAAAGAGAATATGGAGTTGCATAAATTGATTTGTAGATTGCAAAGATCGTACAGTGAACAAGATAAAACAATTTGTAGTCTCAGACAAACTCTTGAAAAGAAAATTTTAGAGGGTGATAGTGATGTGGTTGAGCTACAAACTGAGAAAATACGGTTGACTGGTGTAGAGCAGAAGCTCAGGAGGGAGCTGGAGGCATGCAGAATTGAAACAGAATCCTTGCGAATTGAGAACATTCAACTTCTGAATCGCATTAAAGGGAACGAAAATAGATGTGGCCTCTCCTTGCTAAGGCTGAATGTAGAGCTTCATGCATGGGTGGAATGCTTAAAGATGCAGGGTTTGTCATTGCTTGATGATAGTAATCGCTTCTGTAGTCACTTGCTAGATTGTATAGCATGCAAGCGATCTGAGAATTGCGAAAATGCTAACAGTGATTATGTAAAATATTCATCTGTTGATTTGATTTTCAAGTATCAGAATTTAAGTAGAGAAATCATGAATTTTCGTAGAAGCTTGAAAATTGCTTCTACTGCATTGGAGGACAAATCAAGCATCCAGGCATCGGGATGCATGTGTCAGAGTCTGTTTACAAACACTGATTCTTCAAAGCATCATCAGAATAGCCATGATGGATCAGATGTTGACATGGAAGTCGAGCTGAAGGCTGAAGCTATAATAACTAGACTATTAAGAGAAAAGATTTGTTCTAGAGAGCTAGAATTCGAGCAATTACATGGGGATTTGGCATCTTCAATTCGAAACTGTGATTTGCTGCGTGCAGATATCCAGAGGCTAAATGATGAAGTTTCTTCTCTCTACCTCAAGAAAAAGGATATGGAAATCCAGATGCTGAAGAGAGATGAAGATCTCTCACTGCTGCAAAAAAATCTTCAAGAGTGCACCGGCCACTTGGCTGTTGCGAGGGGCTCGCTGAAGAACACGGCTGAGGAGAGGGATCACATCTGGGAAGAGATGAAACGGTCAAGAGAGAGCAGTGCGCTTATGGATTGTGAGCTCAAATCCCTTCACAAGAAGATTGAATTGCTCGAAGAAGATTTACTCTACAAAGAAGGACAAATTTCCATTCTCAAGGATAGCATTGGGAACAAGGCTTTTGATATGATCTGCAGCCCCGAGTCCTTGAAGCAATTTCACATACAGTGAGCAAGAAGCGCTTGAATTTGATTCTGCTGGATGGTCTCTCTCGAATGGCTGGATGGTCTCTTTCATATGGCAGCGATGATAAGTGCTAATTTTGGAGCAAAAGTGCATGAGATTCCTGTGGGAAAGAGAGAAGAGAGTGGAGAGAAGCAAGAAAGCGATGTAAAGCATACCACTTTTGCTTACACTTTTGTTTACAATGTATAACAATATCTAGTGAATGGTTGTGGTCTAATGGCTAATGTTCTTGAATTTAAACTCTTAAGAGGTAAGGGTTCAAAATTTATCGATCACTTAATTGCCTCATCGAGACTTAACTTCTTTCCAAATAAATAGTGAACTTCTAAGTGGCAATTTAATTGCAAAGGAATTTGGCACACCCTATAAACTTCAAAATTTTCC

Network for GWHGAAEX000204

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.280
SRP064423	SRR2545915	Juvenile tuber	3.900
SRP108465	SRR5643513	five period of Gastrodia elata	2.030
	SRR5643514	five period of Gastrodia elata	1.930
	SRR5643515	five period of Gastrodia elata	1.760
	SRR5643524	five period of Gastrodia elata	1.850
	SRR5643525	five period of Gastrodia elata	1.120
	SRR5643528	five period of Gastrodia elata	0.880
	SRR5643658	five period of Gastrodia elata	1.240
	SRR5643659	five period of Gastrodia elata	2.760
	SRR5643660	five period of Gastrodia elata	2.730
	SRR5643661	five period of Gastrodia elata	2.530
	SRR5643662	five period of Gastrodia elata	2.390
	SRR5643663	five period of Gastrodia elata	1.530
	SRR5643664	five period of Gastrodia elata	1.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.840
SRP279888	Gastro	Gastrodia elata tuber	2.23
	Juven	Juvenile tuber	1.08
	Mother_Gastro	Mother tuber of Gastrodia elata	2.83
	Mother_Juven	Mother tuber of Juvenile	0.81