Detail information of GWHGAAEX000206/evm.TU.scaffold_0.373
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|478483420|ref|YP_007714070.1| | 8.00E-36 | SSU ribosomal protein S3e (S3p) [Candidatus Methanomethylophilus alvus Mx1201] |
| KOG | KOG3181 | 1.00E-146 | 40S ribosomal protein S3 |
| nr | gi|720018899|ref|XP_010261940.1| | 7.90E-159 | PREDICTED: 40S ribosomal protein S3-3-like [Nelumbo nucifera] |
| Swissprot | tr|Q9FJA6|RS33_ARATH | 4.00E-147 | 40S ribosomal protein S3-3 |
| trEMBL | tr|M0TIP4|M0TIP4_MUSAM | 7.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P18570_001} |
| TAIR | AT5G35530 | 1.00E-146 | Ribosomal protein S3 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 19818868 | 19823003 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000206
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07650.16 | KH_2 | 20 | 93 | 1.40E-12 |
| PF00189.19 | Ribosomal_S3_C | 106 | 188 | 4.60E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02985 | RP-S3e, RPS3 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0015935 | Cellular Component | small ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 209.590 |
| SRR2545915 | Juvenile tuber | 283.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 581.250 |
| SRR5643514 | five period of Gastrodia elata | 583.420 | |
| SRR5643515 | five period of Gastrodia elata | 502.680 | |
| SRR5643524 | five period of Gastrodia elata | 586.420 | |
| SRR5643525 | five period of Gastrodia elata | 265.730 | |
| SRR5643528 | five period of Gastrodia elata | 299.450 | |
| SRR5643658 | five period of Gastrodia elata | 219.560 | |
| SRR5643659 | five period of Gastrodia elata | 566.890 | |
| SRR5643660 | five period of Gastrodia elata | 598.160 | |
| SRR5643661 | five period of Gastrodia elata | 726.190 | |
| SRR5643662 | five period of Gastrodia elata | 535.270 | |
| SRR5643663 | five period of Gastrodia elata | 512.990 | |
| SRR5643664 | five period of Gastrodia elata | 529.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 542.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 407.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 602.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 478.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 464.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 431.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 541.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 488.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 643.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 617.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 704.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 704.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 623.43 |
| Juven | Juvenile tuber | 665.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 342.36 | |
| Mother_Juven | Mother tuber of Juvenile | 448.06 |