Detail information of GWHGAAEX000208/evm.TU.scaffold_0.375


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743876246|ref|XP_010907539.1|0PREDICTED: F-box protein At4g18380-like [Elaeis guineensis]
Swissprottr|O49508|FB237_ARATH4.00E-118F-box protein At4g18380
trEMBLtr|M0SFQ6|M0SFQ6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P18400_001}
TAIRAT4G183801.00E-117F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000141984569219846747-
Transcript Sequence

Network for GWHGAAEX000208

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like19534.30E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.650
SRR2545915Juvenile tuber34.890
SRP108465SRR5643513five period of Gastrodia elata75.680
SRR5643514five period of Gastrodia elata64.300
SRR5643515five period of Gastrodia elata66.530
SRR5643524five period of Gastrodia elata58.430
SRR5643525five period of Gastrodia elata128.810
SRR5643528five period of Gastrodia elata122.870
SRR5643658five period of Gastrodia elata112.250
SRR5643659five period of Gastrodia elata59.690
SRR5643660five period of Gastrodia elata56.840
SRR5643661five period of Gastrodia elata64.120
SRR5643662five period of Gastrodia elata67.020
SRR5643663five period of Gastrodia elata62.720
SRR5643664five period of Gastrodia elata60.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_149.690
SRR6049655Rhizomagastrodiae_C368-T10_good_171.150
SRR6049656Rhizomagastrodiae_C368-T07_good_151.610
SRR6049657Rhizomagastrodiae_C368-T07_good_151.130
SRR6049658Rhizomagastrodiae_C368-T04_good_151.410
SRR6049659Rhizomagastrodiae_C368-T04_good_148.040
SRR6049660Rhizomagastrodiae_C368-T01_good_143.660
SRR6049661Rhizomagastrodiae_C368-T04_good_144.170
SRR6049662Rhizomagastrodiae_C368-T01_good_143.850
SRR6049663Rhizomagastrodiae_C368-T01_good_138.970
SRR6049664Rhizomagastrodiae_C368-T10_good_154.430
SRR6049665Rhizomagastrodiae_C368-T10_good_154.430
SRP279888GastroGastrodia elata tuber 63.75
JuvenJuvenile tuber65.56
Mother_GastroMother tuber of Gastrodia elata 183.70
Mother_JuvenMother tuber of Juvenile 146.88