Gene detail

Detail information of GWHGAAEX000213/evm.TU.scaffold_0.383

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	1.00E-23	FOG: PPR repeat
nr	gi\|743883231\|ref\|XP_010909359.1\|	8.70E-150	PREDICTED: pentatricopeptide repeat-containing protein At1g63400-like [Elaeis guineensis]
Swissprot	tr\|Q9SS81\|PP221_ARATH	3.00E-24	Pentatricopeptide repeat-containing protein At3g09060
trEMBL	tr\|U5CW47\|U5CW47_AMBTC	3.00E-63	Uncharacterized protein {ECO:0000313\|EMBL:ERN14364.1}
TAIR	AT3G09060	1.00E-23	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	20038651	20051489	+

Transcript Sequence
>GWHTAAEX000213 TAAATTCTCAAACAATCTATATAGCATTTTAAATTTTTTTAAAGAAGCATAATACCACTCAATTACAAAAGAGTCCATAGTTTGCCTCTGTACATTCCCATGTTTGCTCCTCGAGTTCAGGACTCTTGCACTTGGTATTGATTTGCTTGTCCGCTAACTCAGGAGATAACTATAAAATGGCCACAAGCTGTCTTGCCTTTTAAATGAAGCCAGTTTCTGTTGCCCTTTTCAGATCGTTGTTCTGCCAATTTCCCTCATTTTCTCTATATTATGCTGCCGCCGCCGCTTCTTCTTCTTCTTCTTCCTACCGCAGGCTGCACCTTAGCTGTACGCCCCCTGCATCTCCGAACCTAACTTCAGACCTTCTCGCCTTATTCTCAAAGCTCTCCAAAAACCCTAACAGCCCCAAAATCCTATCTTTGGTCGACTCCATCCTAACTAAATCCCACCTCTTCGACTCCACATCCTCCCTTGTTGCCCTCCATGGCCTCGCCCAGTCCAATAAGCTTACCCGAGCCAAAGACTTGCTGTCCTCCCTCAAGCAAAGCGAAAAAGTTCCCATTTTTTTCCTCTACAGCATCGTCTTTCAATGCCTGCTTCCTCGAAACCCCATTCGCGATGTTGAAAGCGTGTGGAACTGTCTCCACAGAGAATCTACTGGCCACTTCACAGAGAAGTTTGTGCTCTATGCTTGCCGGCGTTTTGACGATGCCTCGGATTTAGAGCCTCTCTGCAGCCGGATTCTGTTGAGTAATTGGGCGCTAAGCCGCGATGCATTCGTCGCACTGATTGGCGCGCTTTGCTTGAAAAAGAATCCTAATCCCGCTTTGGCTCGAGATGTGTTGAACCATATGCTGGAGGGGGCTTTGGAAGCTGATGAGTTGAGTTATTACACCGTGTTTCGGAGCTTTTGCAGTATTGGGGATGCCTCCGGAGCTGATTCTGTGCTGAGAGATATGGTCCAGAGGAGGAACTGCAGATTGGATTTGTTTGTCTATGAGGATTTTCTTTATTGCCTCTGTAAAGCTGGGAAGTTTAGGGAGGCGCGTAAGCTGTTTGCTAAAATGTGCAAAAAGGATGTAACTCATGGTTCGAGTCTGGGTGCTAATCTAAAGCCTGGGAGGAGGACCATCTTTCAGATAAGTCCATCAAATGTGATATCTGAGACAATGGCTTTCGAAGGCTATTTTCGGTCATTGTGTGACTGTGGGCGACTGGAGGAAGCTGAGAGCTTACTGCAAGATGCCAAATTGAAATGCTTGGTATTGGAAAGTTGTGTGGATAAGTCATTTATGGGAGCTCTATTCAGTTCCGGTCGGCATGAAGAAGCTATGCGGATATTCAGAGATAAAAGAAGGAGAGGGGGTTCTTTAGTCGTAGATTTTGCTGCTACAATTATTGCTTGTCTCTGCAATGCCGGCAGAGTCGACGATAGCTTTGAGCTTGCTTGTGAATTGGCAAATGAGGGACATGTTCTAACTGCATGGGTTTGGAACCCGATAATGAAAAGATACTGTGAAGATAGGAGAGCAGAGGAGGCAATGGATATCTTTGAAGGAATTAAGCTGGGTACTTTGAGTGCTTTTTTGAGACCTGATGGGTCTACTTATGAAATTATGATACATGGACTTGTGAGCATGGGAATGATGGATAAGGCGATCAGTGTTTTTGAAGAGATGAAGAGGGAGAAGTATGCAGCAAATATTGAGCTATATTGTGTTTTTGTTAGAAATTTTCATATGCTCGGGAGGCGAATGAAAGCTCAGGAATATTTGAATTATGCTATCGAAAATGGCGCCTTTGCTTCTTTTTCTCAGTGGAAAGTCTTATTCAAAACATTGACATCATTGCCTGGTCATGATGTTTTTCAAGGAACAAGTCAGAATGAGTTTGACTATAGCAAGAATACAAAAAGAAGCTTCTGTCTGAGAAACTTTGCCTTGGAATGATGGATGATAGCATTTGAAGCTGTGCTGCTTCCATGTTCCCTGGATTTGAAGCCCCTTCATATTCAGCGCTCCCCATATAAACAACATATGCCTGCCAGTTCGATCAAGCCTCAAATAATTTGAAGAAACAGATGACTGAATATGATAATTTATTCGAATATTATGATCATCCGTACCTCTGGAATCTGTGATGCTGCATGCACAAAGAGGTCAGCAGCCAAACTTAGCAGGAGGAATTGAAGAAGGTAATCCATTATCGACAACAAATATTTATGATTCATTAGTGAGGCTGGTAGATTAGCACACAGTTAGTTTGTTTGTGTGGAGCATTTGTAGGCACTCTTCTCATTCTTCCTTTATATCAAAATTCATAAGGATGTCTTTCAGTGTGCCAACAACTTTTAAGCTTTCAAATTTGCTTTTTTGCACTGAAAACAGCAAATAGAAGCATTGTTTAGCACTCCCACCACCTTACAATCAAACTGTTGTAAACTCTTTTTTTTTTCCCCTTCCGCTTACCTTTACAGATTCTCCTGAGTTTTATCATTATTAAGCAAAAGTATACCCTCATCTAAAGAAAAAAAGTGCATGTTTTATTTTGATGTGATGAGCACACTACTTGATGACAATACATTAATCAAATGGAAATGGCAGATTCGTCAATTGATCAATAACAAACAGCTTGCTTTGAATAATGATTTAATTAGCAATCTTGCTGCTTTACAGTCTAGGAGGGGAGATTCTTGGCATCATTGCCTATGCCCT

Network for GWHGAAEX000213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	228	255	0.35
PF01535.19	PPR	270	292	0.0015
PF01535.19	PPR	362	387	0.42
PF01535.19	PPR	429	452	0.13
PF01535.19	PPR	467	495	3.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.860
SRP064423	SRR2545915	Juvenile tuber	3.010
SRP108465	SRR5643513	five period of Gastrodia elata	3.440
	SRR5643514	five period of Gastrodia elata	2.460
	SRR5643515	five period of Gastrodia elata	5.320
	SRR5643524	five period of Gastrodia elata	2.920
	SRR5643525	five period of Gastrodia elata	3.120
	SRR5643528	five period of Gastrodia elata	4.170
	SRR5643658	five period of Gastrodia elata	1.770
	SRR5643659	five period of Gastrodia elata	4.540
	SRR5643660	five period of Gastrodia elata	3.700
	SRR5643661	five period of Gastrodia elata	4.230
	SRR5643662	five period of Gastrodia elata	4.060
	SRR5643663	five period of Gastrodia elata	3.750
	SRR5643664	five period of Gastrodia elata	4.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.330
SRP279888	Gastro	Gastrodia elata tuber	2.88
	Juven	Juvenile tuber	5.33
	Mother_Gastro	Mother tuber of Gastrodia elata	12.31
	Mother_Juven	Mother tuber of Juvenile	6.69