Detail information of GWHGAAEX000214/evm.TU.scaffold_0.384
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|71282552|ref|YP_270567.1| | 1.00E-103 | serine protease [Colwellia psychrerythraea 34H] |
| nr | gi|695009960|ref|XP_009391633.1| | 0 | PREDICTED: subtilisin-like protease isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LNU1|CRSP_ARATH | 0 | CO(2)-response secreted protease {ECO:0000303|PubMed:25043023} (Precursor) |
| trEMBL | tr|M0SWK9|M0SWK9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P07800_001} |
| TAIR | AT1G20160 | 0 | Subtilisin-like serine endopeptidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 20046676 | 20051489 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000214
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 37 | 118 | 3.00E-13 |
| PF00082.21 | Peptidase_S8 | 143 | 615 | 7.00E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.120 |
| SRR2545915 | Juvenile tuber | 2.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.690 |
| SRR5643514 | five period of Gastrodia elata | 1.480 | |
| SRR5643515 | five period of Gastrodia elata | 3.140 | |
| SRR5643524 | five period of Gastrodia elata | 1.910 | |
| SRR5643525 | five period of Gastrodia elata | 15.060 | |
| SRR5643528 | five period of Gastrodia elata | 9.570 | |
| SRR5643658 | five period of Gastrodia elata | 2.020 | |
| SRR5643659 | five period of Gastrodia elata | 2.840 | |
| SRR5643660 | five period of Gastrodia elata | 0.600 | |
| SRR5643661 | five period of Gastrodia elata | 2.480 | |
| SRR5643662 | five period of Gastrodia elata | 3.560 | |
| SRR5643663 | five period of Gastrodia elata | 3.160 | |
| SRR5643664 | five period of Gastrodia elata | 1.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.87 |
| Juven | Juvenile tuber | 0.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.55 | |
| Mother_Juven | Mother tuber of Juvenile | 0.98 |