Detail information of GWHGAAEX000215/evm.TU.scaffold_0.385
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 5.00E-24 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG1187 | 5.00E-151 | Serine/threonine protein kinase |
| nr | gi|743873903|ref|XP_010906943.1| | 0 | PREDICTED: protein kinase 2B, chloroplastic-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|O49840|APK2B_ARATH | 1.00E-151 | Protein kinase 2B, chloroplastic (Precursor) |
| trEMBL | tr|M0T5A4|M0T5A4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P08550_001} |
| TAIR | AT2G02800 | 5.00E-151 | protein kinase 2B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 20054944 | 20058714 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000215
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 80 | 355 | 1.10E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VIIa-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.150 |
| SRR2545915 | Juvenile tuber | 27.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.310 |
| SRR5643514 | five period of Gastrodia elata | 13.860 | |
| SRR5643515 | five period of Gastrodia elata | 63.530 | |
| SRR5643524 | five period of Gastrodia elata | 19.890 | |
| SRR5643525 | five period of Gastrodia elata | 27.680 | |
| SRR5643528 | five period of Gastrodia elata | 108.200 | |
| SRR5643658 | five period of Gastrodia elata | 22.650 | |
| SRR5643659 | five period of Gastrodia elata | 49.270 | |
| SRR5643660 | five period of Gastrodia elata | 21.210 | |
| SRR5643661 | five period of Gastrodia elata | 44.560 | |
| SRR5643662 | five period of Gastrodia elata | 66.240 | |
| SRR5643663 | five period of Gastrodia elata | 41.080 | |
| SRR5643664 | five period of Gastrodia elata | 100.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 92.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 84.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.03 |
| Juven | Juvenile tuber | 7.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 197.14 | |
| Mother_Juven | Mother tuber of Juvenile | 61.12 |