Detail information of GWHGAAEX000221/evm.TU.scaffold_0.391
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427717166|ref|YP_007065160.1| | 3.00E-11 | WD40 repeat-containing protein [Calothrix sp. PCC 7507] |
| KOG | KOG0302 | 0 | Ribosome Assembly protein |
| nr | gi|743830458|ref|XP_010934427.1| | 0 | PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Elaeis guineensis] |
| Swissprot | tr|O22468|MSI2_ARATH | 7.00E-34 | WD-40 repeat-containing protein MSI2 |
| trEMBL | tr|M0TNZ5|M0TNZ5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P09420_001} |
| TAIR | AT2G19540 | 0 | Transducin family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 20137875 | 20156421 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000221
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12265.7 | CAF1C_H4-bd | 45 | 111 | 1.00E-11 |
| PF00400.31 | WD40 | 265 | 298 | 0.0018 |
| PF00400.31 | WD40 | 352 | 388 | 0.025 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.740 |
| SRR2545915 | Juvenile tuber | 37.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.140 |
| SRR5643514 | five period of Gastrodia elata | 49.620 | |
| SRR5643515 | five period of Gastrodia elata | 49.020 | |
| SRR5643524 | five period of Gastrodia elata | 50.030 | |
| SRR5643525 | five period of Gastrodia elata | 54.320 | |
| SRR5643528 | five period of Gastrodia elata | 54.890 | |
| SRR5643658 | five period of Gastrodia elata | 68.280 | |
| SRR5643659 | five period of Gastrodia elata | 48.180 | |
| SRR5643660 | five period of Gastrodia elata | 48.120 | |
| SRR5643661 | five period of Gastrodia elata | 43.730 | |
| SRR5643662 | five period of Gastrodia elata | 43.410 | |
| SRR5643663 | five period of Gastrodia elata | 45.730 | |
| SRR5643664 | five period of Gastrodia elata | 38.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 50.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 52.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 43.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 55.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 55.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.33 |
| Juven | Juvenile tuber | 98.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.64 | |
| Mother_Juven | Mother tuber of Juvenile | 64.27 |