Gene detail

Detail information of GWHGAAEX000223/evm.TU.scaffold_0.393

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108802877\|ref\|YP_642814.1\|	5.00E-29	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
KOG	KOG0032	0	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
nr	gi\|695062435\|ref\|XP_009419685.1\|	0	PREDICTED: calcium-dependent protein kinase 34-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FMP5\|CDPKH_ARATH	0	Calcium-dependent protein kinase 17
trEMBL	tr\|A0A0A0KEZ5\|A0A0A0KEZ5_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN48093.1}
TAIR	AT5G12180	0	calcium-dependent protein kinase 17

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	20162711	20168536	+

Transcript Sequence
>GWHTAAEX000223 GGGTGATATATCGATATAAATTCTTATGAACAGCTAAATTGGGATGGGTATATTGAATTTTATGTAAAAATAAAAAATTTTGAATTTTGATAGCAACAAAAATGAAGAATTGCTGTAATTAAATCATGAAATAAACTTTGGAAGGCTAAATTATTCATGTGCAGCTAAATTATTCAATCGGGTTGATCAATATTAATATTAATATTTAGATATAAAAATTTAAGCGTATACGTGCACAACACCAATCCTTGATTATCTCTGTCTGAGTTCTAGAAAAACTACAAATAGAAAAAAAAATCGATTTTGTTGACTCTGTTTTCCTAAAGATAGAAACTTAAACAGATCAGAACCATCAGCTTTCCCCACCATTCCCTCCTCACGTCCACTAATCCCCAATCCCTGTCCTTTTTCTCTTCGTCCTCCTCCTCCTTCTCTCTTTGCAATTCATTCCCACCATGGGCAACTGCTTCTCCAGCTCAAGCAAAACCTCGGCTGCTGCCGCCCCTTCTTCTGAGACCAACCCCGAGCCATTGCACAGCCTTAAATCACCTCCTTCCATCGTAAAACCGCCAAAAGCTGCTTCCATAGGCCCTGTGTTGGGCCGGCCCATGGAGGATATCAGGTCTGTGTACACCTTAACCAGGGAGCTAGGGCGCGGGCAGTTCGGCATCACCCACCTCTGCACCCACAAAGCGACTGGGCAGCAATTCGCCTGCAAGACCATCGCCAAGCGCAAACTCCACAATGCGGAGGACGTGGAGGACGTGCGACGAGAGGTGCAGATTATGCACCACCTTACAGGCCAGCCCAACATTGTCGAGCTCAAGGGCGCCTACGAAGACAAGCATTCTGTGCACCTGGTCATGGAGCTCTGCGCAGGAGGAGAGCTCTTCGACAGGATCATCGCCAAGGGCCTTTTCACGGAGAGGGCCGCCGCCGCCCTCCTCAGGACCGTCGTGCAGATTGTCCACACCTGCCATTCCATGGGAGTCATGCACAGGGACCTCAAGCCTGAGAACTTCTTACTGCTCAGCAAAGCCCCAGATGCCCCTCTCAAGGCCACTGACTTTGGCCTCTCTGTTTTCTTCAAGCCAGGGGAGATCTTCAAAGATATAGTTGGTAGTGCATATTATATTGCGCCCGAAGTCTTGAATAGAAAGTATGGACCAGAAGTTGATATATGGAGTATTGGTGTTATGCTTTACATTCTTTTGTGTGGAGTTCCTCCTTTTTGGTCAGAATCTGAACATGGAATCTTCAGAGCAATCTTGGAATCTCCGATAGATTTGAAGAGCGATCCCTGGCCAAACATATCATATGGTGCAAAAGATCTTGTCAAGAAGATGCTTTGCAAAGACCCTCAAAAGAGGTTAACAGCATTTGATGTCCTTAACCATCCATGGATCAAAGAAGATGGAGAAGCACCTGATACACCTCTTGATAATGTTGTTCTCAATAGGCTAAAGCAATTCAGAGAGTTAAACAAGTTTAAACAAGTTGCTTTGAGGGTAATTGCCGAATGCTTATCAGAGGAAGAGATTAGAGGTCTTAAGGAAATGTTCAAAAATATGGATACTGATAATAGTGGGACAATAACTGCTGAAGAGCTAAGACAAGGACTCCTTAAACAAGGAACAAAGCTTTCAGAAGCAGAAGTTAAGCAATTATTAGACGCGGCCGATGCTGATGGAAATGGAACTATTGACTATGATGAATTCATCACTGCAACAATGCATCTGAACAGAATAGATAGAGAAGAACATTTATATACAGCATTTCAATATTTTGATAAAGATAATAGTGGCTTCATCACAAAAGAAGAGCTTGAGCAAGCTCTTAAAGAAAGGGGATTTTATGATACTAAGGACATCAAAGATATAATATCTGAAGCTGATGCTGATAATGATGGAAGAATAAATTATGAGGAGTTTTCTGCAATGATGAGGAAAGGCAATCCAGAAGTGATTAATCCTAAGAAGCGAAGGGATGTTGTGCTGTAACAAAGGGCATGCCACTTTCAATGAGCTAGTGATTTTATAATGATGTGCATTACTAGGACGAATTAATATGGAGGGTAATATTTAACACCTTGCATGGGATTTTTAAGTATTCTATATTTAATTTAATATAAAGTGGTCAGAAATTGAGAAGCTTAAATATTGCTTATGAAATATATTATGTTTACACAAGAATATATGTCAAAATATATTCAGGATCAATAAATTTTTTTAATTTTTTTAATTTTTGTATATAGGTTCTATAAAAAATTGTATTTAATATATTTTAATGTATAATACTGTGTAAGTATACTAATATTCTATTGTTAAG

Network for GWHGAAEX000223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	59	317	5.20E-74
PF13499.5	EF-hand_7	365	425	6.80E-12
PF13499.5	EF-hand_7	434	497	4.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005509	Molecular Function	calcium ion binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.620
SRP064423	SRR2545915	Juvenile tuber	0.770
SRP108465	SRR5643513	five period of Gastrodia elata	1.700
	SRR5643514	five period of Gastrodia elata	1.440
	SRR5643515	five period of Gastrodia elata	1.180
	SRR5643524	five period of Gastrodia elata	0.970
	SRR5643525	five period of Gastrodia elata	2.570
	SRR5643528	five period of Gastrodia elata	16.530
	SRR5643658	five period of Gastrodia elata	3.050
	SRR5643659	five period of Gastrodia elata	0.600
	SRR5643660	five period of Gastrodia elata	0.830
	SRR5643661	five period of Gastrodia elata	0.630
	SRR5643662	five period of Gastrodia elata	0.800
	SRR5643663	five period of Gastrodia elata	1.020
	SRR5643664	five period of Gastrodia elata	0.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.890
SRP279888	Gastro	Gastrodia elata tuber	2.56
	Juven	Juvenile tuber	1.22
	Mother_Gastro	Mother tuber of Gastrodia elata	19.22
	Mother_Juven	Mother tuber of Juvenile	12.76