Detail information of GWHGAAEX000225/evm.TU.scaffold_0.395


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|590584726|ref|XP_007015258.1|2.47E-20RPM1-interacting protein 4 (RIN4) family protein, putative [Theobroma cacao]
trEMBLtr|A0A061GUM2|A0A061GUM2_THECC9.00E-21RPM1-interacting protein 4 (RIN4) family protein, putative {ECO:0000313|EMBL:EOY32877.1}
TAIRAT5G099601.00E-16Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142030457020328670+
Transcript Sequence

Network for GWHGAAEX000225

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05627.10AvrRpt-cleavage17484.60E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.450
SRR2545915Juvenile tuber13.050
SRP108465SRR5643513five period of Gastrodia elata10.860
SRR5643514five period of Gastrodia elata12.560
SRR5643515five period of Gastrodia elata16.690
SRR5643524five period of Gastrodia elata12.800
SRR5643525five period of Gastrodia elata34.580
SRR5643528five period of Gastrodia elata27.380
SRR5643658five period of Gastrodia elata25.110
SRR5643659five period of Gastrodia elata15.300
SRR5643660five period of Gastrodia elata12.770
SRR5643661five period of Gastrodia elata13.070
SRR5643662five period of Gastrodia elata17.690
SRR5643663five period of Gastrodia elata16.200
SRR5643664five period of Gastrodia elata16.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.950
SRR6049655Rhizomagastrodiae_C368-T10_good_116.520
SRR6049656Rhizomagastrodiae_C368-T07_good_111.780
SRR6049657Rhizomagastrodiae_C368-T07_good_110.050
SRR6049658Rhizomagastrodiae_C368-T04_good_18.160
SRR6049659Rhizomagastrodiae_C368-T04_good_110.170
SRR6049660Rhizomagastrodiae_C368-T01_good_19.370
SRR6049661Rhizomagastrodiae_C368-T04_good_19.370
SRR6049662Rhizomagastrodiae_C368-T01_good_18.790
SRR6049663Rhizomagastrodiae_C368-T01_good_17.750
SRR6049664Rhizomagastrodiae_C368-T10_good_114.470
SRR6049665Rhizomagastrodiae_C368-T10_good_114.470
SRP279888GastroGastrodia elata tuber 22.42
JuvenJuvenile tuber14.76
Mother_GastroMother tuber of Gastrodia elata 38.26
Mother_JuvenMother tuber of Juvenile 41.93