Detail information of GWHGAAEX000237/evm.TU.scaffold_0.410
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521464512|ref|YP_008151634.1| | 8.00E-26 | hypothetical protein SCE1572_26190 [Sorangium cellulosum So0157-2] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|242093772|ref|XP_002437376.1| | 0 | hypothetical protein SORBIDRAFT_10g025840 [Sorghum bicolor] |
| Swissprot | tr|Q9LX66|HERK_ARATH | 0 | Receptor-like protein kinase HERK 1 (Precursor) |
| trEMBL | tr|C5Z751|C5Z751_SORBI | 0 | Putative uncharacterized protein Sb10g025840 {ECO:0000313|EMBL:EER88743.1} |
| TAIR | AT3G46290 | 0 | hercules receptor kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 20784468 | 20788039 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000237
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12819.6 | Malectin_like | 38 | 394 | 4.10E-40 |
| PF07714.16 | Pkinase_Tyr | 501 | 695 | 1.10E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_CrRLK1L-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.560 |
| SRR2545915 | Juvenile tuber | 60.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.970 |
| SRR5643514 | five period of Gastrodia elata | 26.630 | |
| SRR5643515 | five period of Gastrodia elata | 31.640 | |
| SRR5643524 | five period of Gastrodia elata | 25.000 | |
| SRR5643525 | five period of Gastrodia elata | 40.620 | |
| SRR5643528 | five period of Gastrodia elata | 30.080 | |
| SRR5643658 | five period of Gastrodia elata | 40.080 | |
| SRR5643659 | five period of Gastrodia elata | 31.150 | |
| SRR5643660 | five period of Gastrodia elata | 26.650 | |
| SRR5643661 | five period of Gastrodia elata | 24.890 | |
| SRR5643662 | five period of Gastrodia elata | 27.120 | |
| SRR5643663 | five period of Gastrodia elata | 27.880 | |
| SRR5643664 | five period of Gastrodia elata | 23.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 53.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 63.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 54.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.56 |
| Juven | Juvenile tuber | 36.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.48 | |
| Mother_Juven | Mother tuber of Juvenile | 26.37 |