Gene detail

Detail information of GWHGAAEX000245/evm.TU.scaffold_0.417

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|406025292\|ref\|YP_006705593.1\|	1.00E-17	Ankyrin 2,3/unc44 [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
KOG	KOG0504	0	FOG: Ankyrin repeat
nr	gi\|672130907\|ref\|XP_008789002.1\|	0	PREDICTED: ankyrin repeat-containing protein At3g12360-like [Phoenix dactylifera]
Swissprot	tr\|Q9C7A2\|Y3236_ARATH	0	Ankyrin repeat-containing protein At3g12360
trEMBL	tr\|I1H6T9\|I1H6T9_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G66220.1}
TAIR	AT3G12360	0	Ankyrin repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	20970323	20973546	-

Transcript Sequence
>GWHTAAEX000245 GTCTAAATATCATTCCTTTAATCCTCTGACAAAAGTAAAATATTAAAAAAAAAGAAATAAGAACCGGATTAATTCATCGACTTACAGATGGTCTCCTCTCACATTTTCTCCTTTGTTTTTATTGGCCCTTTTCTCAGTCACTATGGAGCGCTTGCTTTTTCTCCACGCGGGAAAACTGCAGTCGAGATTTCTAATACCTTTCTGAATCTGAATCGATCGTCTTTGTCCCCGACGAATCTGGCCGACCAAACCCTACAAATCCCTGAATCGGCCCGATGATTCAGAGTCCGAGAACGAACTCCTCGTCGCCGCTGCCGTCGCCTACGGCGTCGTCGTCTTCCTCGGCGCCGGCGCTGGTGCTGTCTAACTCGGGGAAGAGGATGGAGAGCTCGGGGAAGAAGAAGTACGTGAAGCAAGTGACGGGCAGGCTCAACGACACGGAACTGCATCTTGCTGCGCAGCGCGGGGATCTAGCCGCAGTTCATAAGATCCTGAGCGAGATCCACTCCCAGATGACGGGAGAGGCGGGAGGGGAGGAGTTCGAATCCGAGGTCGCCGAGATAAGGGCGGCCATGGTGGGCGAAGTGAACGAAGTCGATGAGACCGCGCTTCTCATCGCAGCCGAGAGAGGGTTTCTTGATGTTCTGCTTGAGCTTCTCAAGTATTCCACCAAGGAGACCGTATTGAGGAAGAACAGATCGGGCTACGATGCGCTCCACGTTGCTGTTAGGGAAGGCCACTTAGCAATTGTGCAGGCTCTTCTGGGGCACCAGGATTGGAGCCTGAGCAAATCCTTGGGTCCGGCCAATATAACCCCTCTGATATCAGCGGCCATTAGAGGGCACACAGAGGTGGTGAACTTCGTGCTGGGTCAGGACATGAGCCTGGTGGAGCTGTCAAAATCGAACGGCAAGAACGCCCTGCACTTTGCGGCCAGGCAGGGGCATTTGGAGATCGTCCGATCCCTGCTCGCCAAGGATCAGCAGCTTGCCCGCAGGACCGACAAGAAGGGGCAGACCGCCCTCCACATGGCCGTGAAGGGTACCGGCACCCAAGTCGTCAAAGCCCTCGTCGACGTCGACCCTGCCACCGTCATGCTCCCCGACCGCTCCGGCAACACCGCCCTCCACGTCGCAACCAGGAAAAAGCGATCCGAGATAGTGAGGGTTCTGCTGTCTCTCCCTGACATCCATGTGAACGCGCTAACAAGGGACCACAAGACGGCTCTGGACATCGCGGAGGGGCTGCCGGCGTCGGAGGAGGCCGGTGAGATCAAGGGCATACTGACACACTTTGGCGCTGTGCGGGCGAATGAGCTGAACCAGCCCCGCGACGAGCTGCGGAAGACGGTGACGGAGATCAAGCAGGATGTGCACACACAGCTGGAGCAGACGCGGAAGACGAACAAGAACGTCGACGGGATCGCCAAGGAGCTACGGAAGCTCCACCGGGAGGGCATCAACAACGCGACCAACTCTGTGACGGTCGTCGCCGTGCTCTTCGCCACGGTAGCATTTGCGGCGATCTTCACGGTCCCAGGCGGCGGCGACAACGACGGGGTGGCGGTGACCATCGGGACCAGCTCTTTCAAGGTGTTCTTTGTCTTCAACGCGATTGCGCTGTTCACGTCGCTGGCAGTGGTAGTGGTGCAGATAACACTGGTCAGGGGGGAGACGAAGTCCGAGAGGCGGGTAGTGGAGGTGATCAACAAGCTCATGTGGCTGGCGTCTGTGTGCACTACGGTGGCTTTCATCGCGTCGTCTTATATCGTTGTTGGGCGGCGGTCGCGTTGGGCAGCTATCCTCGTCACGATGATCGGCAGCGTGATAATGGCCGGAGTGCTTGGGACGATGACGTACTATGTGGTAAGATCCAAGAGGAGCCGCTCTATAAGGAAGAGGGATAAGCTGTCCAGGAGGAGCACTTCCAGCTCCTGGCGCAACTTCGAGGTTTCTGAATCGGAGGTTGACCCGATCTATGCCATTTAGAGAACCAAAGTCTATGAATTATTTTTTTTTATCGTAGGGGTTAGGACTTCTTTCTCTACAAAATGAAATCTATGCTATTCTGATTTTTCTCCGATTACAAGCACATGAATGCTATCATGAACTCCATAAATAATGACATGGAAATAATTTTTGTATATATGTAAATACTATGAAGTTTGTTTATCAATAACCAAAAATTTAATATCTTATCATTAATGAAGTGTATGTTTATTATTGTACTTAGAACAAACCCAAGTGGTTGAAGCAGTAGTATTTTATTAATAAATATTAAAATTTAGTTCTGAAT

Network for GWHGAAEX000245

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.6	Ank_2	57	165	1.40E-08
PF12796.6	Ank_2	178	236	2.30E-10
PF12796.6	Ank_2	243	308	6.20E-11
PF13962.5	PGG	393	499	2.90E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.880
SRP064423	SRR2545915	Juvenile tuber	17.240
SRP108465	SRR5643513	five period of Gastrodia elata	49.350
	SRR5643514	five period of Gastrodia elata	40.380
	SRR5643515	five period of Gastrodia elata	50.750
	SRR5643524	five period of Gastrodia elata	43.130
	SRR5643525	five period of Gastrodia elata	95.580
	SRR5643528	five period of Gastrodia elata	72.780
	SRR5643658	five period of Gastrodia elata	82.310
	SRR5643659	five period of Gastrodia elata	39.300
	SRR5643660	five period of Gastrodia elata	33.700
	SRR5643661	five period of Gastrodia elata	41.130
	SRR5643662	five period of Gastrodia elata	41.890
	SRR5643663	five period of Gastrodia elata	37.110
	SRR5643664	five period of Gastrodia elata	49.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	49.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.680
SRP279888	Gastro	Gastrodia elata tuber	40.83
	Juven	Juvenile tuber	47.33
	Mother_Gastro	Mother tuber of Gastrodia elata	64.50
	Mother_Juven	Mother tuber of Juvenile	59.26