Detail information of GWHGAAEX000257/evm.TU.scaffold_0.430


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|389878863|ref|YP_006372428.1|02-oxoglutarate dehydrogenase E1 component [Tistrella mobilis KA081020-065]
KOGKOG045002-oxoglutarate dehydrogenase, E1 subunit
nrgi|672129155|ref|XP_008788082.1|0PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q7XTJ3|ODPA3_ORYSJ3.00E-06Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic (Precursor)
trEMBLtr|A0A059BCG3|A0A059BCG3_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW63729.1}
TAIRAT5G6575002-oxoglutarate dehydrogenase, E1 component

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142117371221181327-
Transcript Sequence

Network for GWHGAAEX000257

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16078.42-oxogl_dehyd_N651043.00E-17
PF00676.19E1_dh2465659.30E-67
PF02779.23Transket_pyr6358505.70E-66
PF16870.4OxoGdeHyase_C87110112.20E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00164OGDH, sucA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Citrate cycle (TCA cycle)map00020

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006099Biological Processtricarboxylic acid cycle
GO:0030976Molecular Functionthiamine pyrophosphate binding
GO:0004591Molecular Functionoxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0016624Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms51.490
SRR2545915Juvenile tuber54.260
SRP108465SRR5643513five period of Gastrodia elata84.500
SRR5643514five period of Gastrodia elata105.830
SRR5643515five period of Gastrodia elata97.440
SRR5643524five period of Gastrodia elata117.620
SRR5643525five period of Gastrodia elata107.940
SRR5643528five period of Gastrodia elata124.700
SRR5643658five period of Gastrodia elata83.620
SRR5643659five period of Gastrodia elata102.100
SRR5643660five period of Gastrodia elata104.440
SRR5643661five period of Gastrodia elata112.240
SRR5643662five period of Gastrodia elata104.970
SRR5643663five period of Gastrodia elata91.920
SRR5643664five period of Gastrodia elata100.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_174.700
SRR6049655Rhizomagastrodiae_C368-T10_good_178.720
SRR6049656Rhizomagastrodiae_C368-T07_good_175.030
SRR6049657Rhizomagastrodiae_C368-T07_good_166.620
SRR6049658Rhizomagastrodiae_C368-T04_good_160.560
SRR6049659Rhizomagastrodiae_C368-T04_good_168.320
SRR6049660Rhizomagastrodiae_C368-T01_good_171.480
SRR6049661Rhizomagastrodiae_C368-T04_good_162.420
SRR6049662Rhizomagastrodiae_C368-T01_good_193.210
SRR6049663Rhizomagastrodiae_C368-T01_good_188.110
SRR6049664Rhizomagastrodiae_C368-T10_good_199.500
SRR6049665Rhizomagastrodiae_C368-T10_good_199.500
SRP279888GastroGastrodia elata tuber 64.16
JuvenJuvenile tuber96.66
Mother_GastroMother tuber of Gastrodia elata 76.60
Mother_JuvenMother tuber of Juvenile 101.53