Detail information of GWHGAAEX000262/evm.TU.scaffold_0.435


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|124268989|ref|YP_001022993.1|5.00E-17RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
KOGKOG01187.00E-42FOG: RRM domain
nrgi|672110378|ref|XP_008794999.1|6.82E-65PREDICTED: LOW QUALITY PROTEIN: glycine-rich RNA-binding protein 6, mitochondrial [Phoenix dactylifera]
Swissprottr|Q9FZ84|RBG6_ARATH2.00E-20Glycine-rich RNA-binding protein 6, mitochondrial (Precursor)
trEMBLtr|M0T782|M0T782_MUSAM5.00E-63Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P15340_001}
TAIRAT2G375107.00E-42RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142121160321233027-
Transcript Sequence

Network for GWHGAAEX000262

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1551213.70E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.960
SRR2545915Juvenile tuber26.830
SRP108465SRR5643513five period of Gastrodia elata37.670
SRR5643514five period of Gastrodia elata43.040
SRR5643515five period of Gastrodia elata41.830
SRR5643524five period of Gastrodia elata40.250
SRR5643525five period of Gastrodia elata28.490
SRR5643528five period of Gastrodia elata34.020
SRR5643658five period of Gastrodia elata28.650
SRR5643659five period of Gastrodia elata45.680
SRR5643660five period of Gastrodia elata45.080
SRR5643661five period of Gastrodia elata51.740
SRR5643662five period of Gastrodia elata41.170
SRR5643663five period of Gastrodia elata42.100
SRR5643664five period of Gastrodia elata36.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.310
SRR6049655Rhizomagastrodiae_C368-T10_good_131.380
SRR6049656Rhizomagastrodiae_C368-T07_good_142.070
SRR6049657Rhizomagastrodiae_C368-T07_good_131.810
SRR6049658Rhizomagastrodiae_C368-T04_good_136.950
SRR6049659Rhizomagastrodiae_C368-T04_good_129.510
SRR6049660Rhizomagastrodiae_C368-T01_good_133.720
SRR6049661Rhizomagastrodiae_C368-T04_good_127.320
SRR6049662Rhizomagastrodiae_C368-T01_good_150.830
SRR6049663Rhizomagastrodiae_C368-T01_good_153.100
SRR6049664Rhizomagastrodiae_C368-T10_good_156.120
SRR6049665Rhizomagastrodiae_C368-T10_good_156.120
SRP279888GastroGastrodia elata tuber 51.85
JuvenJuvenile tuber33.14
Mother_GastroMother tuber of Gastrodia elata 35.06
Mother_JuvenMother tuber of Juvenile 24.14