Gene detail

Detail information of GWHGAAEX000267/evm.TU.scaffold_0.440

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383761382\|ref\|YP_005440364.1\|	5.00E-40	hypothetical protein CLDAP_04270 [Caldilinea aerophila DSM 14535 = NBRC 104270]
KOG	KOG1239	1.00E-165	Inner membrane protein translocase involved in respiratory chain assembly
nr	gi\|743780850\|ref\|XP_010920630.1\|	0	PREDICTED: inner membrane protein PPF-1, chloroplastic [Elaeis guineensis]
Swissprot	tr\|Q8LBP4\|ALB3_ARATH	4.00E-166	Inner membrane protein ALBINO3, chloroplastic (Precursor)
trEMBL	tr\|M0TXA8\|M0TXA8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P03990_001}
TAIR	AT2G28800	1.00E-165	63 kDa inner membrane family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	21270697	21317182	-

Transcript Sequence
>GWHTAAEX000267 AAGAAAATTCCGCAAACTAACGTATACTCTCACTTGACACGCCATCAGAGCATCCCTTCTCCAACAACACTATCTTGCGGCACTTTCTTCACTACGCTCTATTCATGGAGGATGCAAATTGGTGAGAGAAGCACGACTCCCTCCCGCAAATGGCGAAAACTCTACCAATTTCTTTTGGGTTCTTCCCTGCTGCTACACATTTGTCCCTTCGTCCGCGCCATGGCGTGCTAGGTTTTCCGCTTTCTGATCCCAGGCGAGCAGGTGCTAGGGTTCGGATGAGCATCGGTGGCTTTCCTCAGCCAAACGGGTTCCCCTCCGCTTTTAATTTAGATGGAATTGCTTCGAGGATGGATGGATTATTCTTCACGTTGGCGGACGCAGTCGTGGCCATGGATCCGTCGACTTCTGAAGTGACAGCGGCTCACAGAAACGGGGGTTGGCTTAGTTTGATCTCAGAGACAATGGAAATTGTTCTCAAGATTCTCAAGGACAGGCTTTCTGCTGTACATGTGCCGTACGCCTATGGCTTTGCAATTATATTGCTTACTGTTATGGTGAAGGCGGCAACTTTTCCTCTGACCAAAAAGCAGGTGGAATCAACGCTATCCATGCAAAGTTTGCAGCCAAAGATCAAAGCAATTCAAGAAAGATTTGCAGGGAACCCGGAAAGAGTACAGCTTGAGACAGCCCAGTTATACAAGCAGGCTGGGGTGAATCCATTAGTGGGAATTTTTGCAACTTTGGTGACAATACCAGTGTGGGTTGGCTTGTACCAAGCTCTCTCAAATGTTGCAAATGAGGGCTTGCTGACTGAAGGATTTTTTTGGATTCCATCTTTGGGAGGTCCAACAACGATTGCTGCTCAGCAGAGCGGTTCAGGAATCTCTTGGCTTATACCTTTCGTGGATGGACATCCACCCCTGGGCTGGTCTGACACTGCTGCTTATCTTGCTCTTCCTGTGCTGCTCGTACTTTCTCAATACATCTCTATGGAAATCATGAAACCACCGCAGACAGATCCAACTTCCAAGAACTCACTTCTCATTTCCAAGTTTTTTCCTCTAATGATTGGCTACTTTTCTTTGTCTGTTCCCTCAGGATTATCAATTTATTGGCTTACAAACAATGTTCTCAGCACAGCGCAACATTTATGGCTGAGAAAATTAGGTGGTGCAAAGTTTATAGTAAGTCAGGATGATGGTGACACTATCAGTGCTGAGCAACCAAAGACCGCTGTTAGGACAGGAGAAAGGTTTAAGCAAATAAAAGAGGAGGAGGCGAGGAAAAAAACGTACAATGCTTTGCAGGCGGAGAAAGCTCAAATTCATGCCACTGATTCAGAATCTGGTGATTTAACTGACGGGAAGTTAGAGGATGAAGCTGCTGATGAGGCATGTGAACCTCCTAGTGGCAACAAAGGGCTTCCAGATTACACAGGCCTTAGGAAGAGCAAAGGATCAAATAGGAAGCGATTGGTGCAGTGATTGGGATATTATTGCACAAAGTTCAGAAGCCAAATGCCACTCTTTTTAATCTATATCCAGGTGTGGCTACGTTATGTTTGAATGGGGAAATTTGCCAAAGTAGTCCTTAACTATTCCAATTTAGCTGATTTAGTCCGGAAACCGGTTTGGTCCTCAAATTATTGAATTTGATTCCGATTCAGCTTCAAGTTGGATCTAGTCAGGATTAGAGAGCTCGAGTAAAATAGTCTGAGAGACTAAACTGTACATTTTTTTTCAGATCGAGACTACTTTGGCTAATCTGAAATAGTCGAAAGACTATTTTGATCAATTTCTGTGATTTATGGGAGTGTTTGATCTCATTATTCTTGACAATAGGAGGACCTCTGTTGGCTTTCTTTGCCAAATTTGTACATTAATAATTTTTTATTTATATAATCGAACTTTAGTGGGAAATGTAAATATAATGTTGCT

Network for GWHGAAEX000267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02096.19	60KD_IMP	125	338	3.90E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03217	yidC, spoIIIJ, OXA1, ccfA	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0032977	Molecular Function	membrane insertase activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.150
SRP064423	SRR2545915	Juvenile tuber	38.800
SRP108465	SRR5643513	five period of Gastrodia elata	36.630
	SRR5643514	five period of Gastrodia elata	37.150
	SRR5643515	five period of Gastrodia elata	38.150
	SRR5643524	five period of Gastrodia elata	40.830
	SRR5643525	five period of Gastrodia elata	65.130
	SRR5643528	five period of Gastrodia elata	55.970
	SRR5643658	five period of Gastrodia elata	69.540
	SRR5643659	five period of Gastrodia elata	38.220
	SRR5643660	five period of Gastrodia elata	38.220
	SRR5643661	five period of Gastrodia elata	36.500
	SRR5643662	five period of Gastrodia elata	44.750
	SRR5643663	five period of Gastrodia elata	44.800
	SRR5643664	five period of Gastrodia elata	43.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.760
SRP279888	Gastro	Gastrodia elata tuber	49.78
	Juven	Juvenile tuber	31.86
	Mother_Gastro	Mother tuber of Gastrodia elata	46.59
	Mother_Juven	Mother tuber of Juvenile	40.66