Detail information of GWHGAAEX000272/evm.TU.scaffold_0.445
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0367 | 2.00E-140 | Protein geranylgeranyltransferase Type I, beta subunit |
| nr | gi|743841869|ref|XP_010937647.1| | 2.42E-168 | PREDICTED: geranylgeranyl transferase type-1 subunit beta [Elaeis guineensis] |
| Swissprot | tr|O80642|PGTB1_ARATH | 5.00E-141 | Geranylgeranyl transferase type-1 subunit beta |
| trEMBL | tr|M0RES8|M0RES8_MUSAM | 4.00E-164 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P02510_001} |
| TAIR | AT2G39550 | 2.00E-140 | Prenyltransferase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 21356564 | 21367201 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000272
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00432.20 | Prenyltrans | 83 | 120 | 0.013 |
| PF00432.20 | Prenyltrans | 138 | 170 | 0.41 |
| PF00432.20 | Prenyltrans | 175 | 218 | 7.50E-15 |
| PF00432.20 | Prenyltrans | 239 | 277 | 1.20E-05 |
| PF00432.20 | Prenyltrans | 283 | 325 | 1.70E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.010 |
| SRR2545915 | Juvenile tuber | 30.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.040 |
| SRR5643514 | five period of Gastrodia elata | 20.540 | |
| SRR5643515 | five period of Gastrodia elata | 15.670 | |
| SRR5643524 | five period of Gastrodia elata | 21.610 | |
| SRR5643525 | five period of Gastrodia elata | 30.430 | |
| SRR5643528 | five period of Gastrodia elata | 34.720 | |
| SRR5643658 | five period of Gastrodia elata | 29.860 | |
| SRR5643659 | five period of Gastrodia elata | 18.560 | |
| SRR5643660 | five period of Gastrodia elata | 18.180 | |
| SRR5643661 | five period of Gastrodia elata | 21.200 | |
| SRR5643662 | five period of Gastrodia elata | 16.310 | |
| SRR5643663 | five period of Gastrodia elata | 18.070 | |
| SRR5643664 | five period of Gastrodia elata | 17.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.95 |
| Juven | Juvenile tuber | 27.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.38 | |
| Mother_Juven | Mother tuber of Juvenile | 39.88 |