Detail information of GWHGAAEX000277/evm.TU.scaffold_0.451


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|406024996|ref|YP_006705297.1|4.00E-21Ankyrin 2,3/unc44 [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
nrgi|703137503|ref|XP_010106460.1|8.87E-178Putative E3 ubiquitin-protein ligase XBAT31 [Morus notabilis]
Swissprottr|Q94B55|XB31_ARATH3.00E-164Putative E3 ubiquitin-protein ligase XBAT31
trEMBLtr|W9SIN1|W9SIN1_9ROSA3.00E-178Putative E3 ubiquitin-protein ligase XBAT31 {ECO:0000313|EMBL:EXC10636.1}
TAIRAT2G288402.00E-154XB3 ortholog 1 in Arabidopsis thaliana

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142145133221456183+
Transcript Sequence

Network for GWHGAAEX000277

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.6Ank_2511355.40E-16
PF12796.6Ank_21682353.10E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.380
SRR2545915Juvenile tuber20.490
SRP108465SRR5643513five period of Gastrodia elata12.400
SRR5643514five period of Gastrodia elata9.360
SRR5643515five period of Gastrodia elata9.890
SRR5643524five period of Gastrodia elata10.010
SRR5643525five period of Gastrodia elata8.170
SRR5643528five period of Gastrodia elata6.940
SRR5643658five period of Gastrodia elata13.930
SRR5643659five period of Gastrodia elata4.820
SRR5643660five period of Gastrodia elata5.580
SRR5643661five period of Gastrodia elata5.640
SRR5643662five period of Gastrodia elata5.450
SRR5643663five period of Gastrodia elata4.590
SRR5643664five period of Gastrodia elata6.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.500
SRR6049655Rhizomagastrodiae_C368-T10_good_124.370
SRR6049656Rhizomagastrodiae_C368-T07_good_123.070
SRR6049657Rhizomagastrodiae_C368-T07_good_116.250
SRR6049658Rhizomagastrodiae_C368-T04_good_122.180
SRR6049659Rhizomagastrodiae_C368-T04_good_122.590
SRR6049660Rhizomagastrodiae_C368-T01_good_120.330
SRR6049661Rhizomagastrodiae_C368-T04_good_120.550
SRR6049662Rhizomagastrodiae_C368-T01_good_121.260
SRR6049663Rhizomagastrodiae_C368-T01_good_125.900
SRR6049664Rhizomagastrodiae_C368-T10_good_124.370
SRR6049665Rhizomagastrodiae_C368-T10_good_124.370
SRP279888GastroGastrodia elata tuber 10.48
JuvenJuvenile tuber19.05
Mother_GastroMother tuber of Gastrodia elata 35.50
Mother_JuvenMother tuber of Juvenile 22.05