Gene detail

Detail information of GWHGAAEX000284/evm.TU.scaffold_0.456

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|17230958\|ref\|NP_487506.1\|	6.00E-40	hypothetical protein alr3466 [Nostoc sp. PCC 7120]
KOG	KOG0315	0	G-protein beta subunit-like protein (contains WD40 repeats)
nr	gi\|743775179\|ref\|XP_010917967.1\|	0	PREDICTED: protein LST8 homolog isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	2.00E-27	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|M0RM83\|M0RM83_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P28590_001}
TAIR	AT3G18140	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	21628543	21656732	-

Transcript Sequence
>GWHTAAEX000284 ATAAAAATCGCATTTCTATCTCTGAGTCGGCCGATCCTCTCTGCGAGGTGAGCGAGGCGAGCGAGGCGTCGAGGCTCTGCACAGGCGCTGCGTCAGGCGAAGGGAAGGCGTGGGCTGCACCGGCGTTGCGTCAGGCGAAGCGAAGGCGGGGGACTCTGCACCGGAGCTGCGTCTGGCGAAGGGGTTGAAGAAGATGAGCCAGCCTTCTGTGGTTCTGGCTACTGCAGGCTATGATCACACCATCAGGTTCTGGGAGGCCAAGAGTGGGAGGTGCTACCGTACTCTTCAGTACCCAGATTCTCAAGTCAATCGGCTTGAAATTGCACCTGATAAGAAATTCTTGGCTGCTGCTGGAAACCCTCACATCCGTCTTTTTGATGTCAACTCAAATAGTCCTCAACCTGTTTTGAGCTACGATTCACATACTAATAATGTCATGGCAGTTGGATTTCAATGTGATGGCAACTGGATGTATTCCGGCTCTGAAGATGGCACAGTTAAAATCTGGGATTTAAGGGCAGCAACTTGTCAACGTGAATATGAGAGTCGGGCAGCTGTTAACACAGTGATTTTACATCCAAATCAGACGGAACTGATATCTGGAGATCAAAACGGAAATATACGTGTGTGGGATTTGACTGCCAATTCTTGCAGCTGCGAACTTGTTCCAGAGGTTGATACTGCTGTGAGGTCGCTAACAGTAATGTGGGATGGCAGCATGGTTGTTGCTGCCAATAACCGTGGAACATGCTATGTATGGCGGCTGCTAAAAGGAACACAGACAATGACATACTTTGAACCTTTGCACAAGTTGCAAGCACATGATAGCTACATTTTAAAGTGCCTGCTTTCACCAGAATTTTGCGATCCGAACCGGTATCTTGCCACAGCATCTTCTGATCATACAGTCAAGATATGGAATGTTGATGGATTTACCTTGGAAAGAGTGTTGACTGGACATCAGCGCTGGGTCTGGGATTGCGTGTTTTCTGTTGATGGAGCATACTTAATAACTGCATCCTCTGATAGCACTGCCAAACTATGGTCAATGTCATCAGGAGAGGCCATAAAAACCTATCAAGGACACCACAAGGCCGTTGTGTGCTGCGCTCTCCATGATGGTGCAGAGTCATCTCCTTCCTGAATTTGCTGTAAGGAATGTTGCAAATGATATCCAATATTGCTACGGGCGTGATGATTTCACAACAGCTGCTGTTATTATTGACAAGTTGCTGTTGTAACTGTTATTAGCTGCTCTGCTATTACAATTGCTTATCTCAATCTATTTATTAAAATTTAGATATAAATTTGTAATTTGTAAATATACTCAAATTTATTATTTTGATTTTTATAGATCGATATATGTTGATCACAATTGTTGTTATGTATTGATTAGAATTTATATATAAAACTATAATTTGCAATTTAC

Network for GWHGAAEX000284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	27	62	0.091
PF00400.31	WD40	69	106	3.30E-08
PF00400.31	WD40	112	147	0.0073
PF00400.31	WD40	202	243	1.50E-05
PF00400.31	WD40	250	285	4.40E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K08266	MLST8, GBL	PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.530
SRP064423	SRR2545915	Juvenile tuber	35.820
SRP108465	SRR5643513	five period of Gastrodia elata	34.930
	SRR5643514	five period of Gastrodia elata	40.120
	SRR5643515	five period of Gastrodia elata	40.350
	SRR5643524	five period of Gastrodia elata	35.110
	SRR5643525	five period of Gastrodia elata	83.060
	SRR5643528	five period of Gastrodia elata	69.590
	SRR5643658	five period of Gastrodia elata	82.480
	SRR5643659	five period of Gastrodia elata	46.590
	SRR5643660	five period of Gastrodia elata	52.860
	SRR5643661	five period of Gastrodia elata	46.990
	SRR5643662	five period of Gastrodia elata	54.610
	SRR5643663	five period of Gastrodia elata	69.140
	SRR5643664	five period of Gastrodia elata	53.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.630
SRP279888	Gastro	Gastrodia elata tuber	53.96
	Juven	Juvenile tuber	56.14
	Mother_Gastro	Mother tuber of Gastrodia elata	44.90
	Mother_Juven	Mother tuber of Juvenile	45.63