Gene detail

Detail information of GWHGAAEX000285/evm.TU.scaffold_0.457

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1140	N-end rule pathway, recognition component UBR1
nr	gi\|743841782\|ref\|XP_010937621.1\|	PREDICTED: uncharacterized protein LOC105056937 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0T772\|M0T772_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P15240_001}
TAIR	AT5G02300	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	21658177	21726265	-

Transcript Sequence
>GWHTAAEX000285 CAGAGCGGAGGCGCTAATCGCCCCGCACCGCCTCGGAGTTCATCCCAGACCAGATCGAGGAATCCGTAAACCCTAAAAAAGCTTTCCCTTCTCTATCTCCTGCTTCCTTTTTGACCCCAGGCTCCTCAATCCTGGGGCGGGGCCGCTCTAGATCGAATTTCTGGAGTTGCGCAAATTGGCTTCGTGTCATGGCCGGGATGGAGATAGATTCATCGCCGGAGCGGGATATCGTGCTTTCACCCCGCGATCGCATCGTCCAGAGGCTTGCAATGCATGGGATTTCACGAGAGCATCTTCAGCTATTTCATCTGGGTCTGGTTTCTTTTGTCCGGGATAACAAACACATGATATCTGAAATTGTTCCATCTATCTTACCAACTATTTTGGATTTAATGGAGGCTCGGAAATTGCAGAATACAAAATTTTCTGGCATATCTGATAAGTTTTTAGTAAAGGAATTATTTGAGGAGAGCATATTGTGGCTGCAATGGTTGATGTTTGGTAATGATCCTCAAGAATCCATGAATAGCTTGGCACTAAGTGGGGATGGCCAACGTGCAGTATGCGGTGCTGTCTGGGGACAAAATGATTTGGCATACCGCTGCCGCACTTGTGAGCATGATCCAACCTGTGCTATTTGTGTTCCTTGTTTTCAGAATAGTAATCACACGGATCATGATTATAAAATTATGTATACCGGCGGTGGATGCTGTGATTGTGGCGATGAAACTGCTTGGAAAAAGGGTGGATTTTGTTCAAAGCATAAAGGTACTGAACAGATCCAACCCCTTTCACAGGAGTTAGCAAATTCTATAGGTCCTGTCTTGGATTCTCTTTTTATGTGTTGGAAAGACAAGATTATGTTTGCTAAACACAAGGTTGGGGAAGTTGCTGATCATGGCAATGCTTTTGAAAAAACTGCTGATGGATTATCTCTTGCAATCGTTAAAATGCTTATGGACTTCTGTAAATGCAGTGAAAGTCTTCTTAATTTTATCTCTATAAGATTAACTGCATGTACTGGTTTACTGGATGATCTTTTGATAGCAGAAAAGCTCTTGGATCAAGAAGTTGTGAAGAGGATACATGAGTTGCTTTATAAACTTCTTGGAGTCCCAGCTTTCAAGTATGATTTTGCAAAGTCTTTCGTACAGTATTACTTGACTATTGTCAAAGAAATGATCAATGACTCTGATGACTCATACCTAAAGAGAGATCCGATGTTAACAACTTTCTCTGTGCAAATCTTTACAGTACCAGCTTTAACTATTCAACTTGTAACTGAGGTTGATCTTTTGAATGCTCTTCTGGAATGCTTAAAGGACCTTTTTCTTTCTTGCGCTGATGCAGATGGTCATTTACTGGCTAGTAAATTGGATAATATGTGTGCTGCAACTGTTCGTTTGATTGAAGATTTTCGCTATGTCATGAGTCACCAAGAGGTTTCTGCCTATGTTGCTCATGAAAGGCCAGATATCTTAAAGAACTGGATTTTTTTATTAAGATTGGTGCAGGGCATGGATGCACTAAAGAGAGTAACAGGGACACATATTGATGACGAAAATAAACATTTTTCTGCACCCTTTGTTCTTGGGTACCATCTTGGGAATGTTAATGCACTTATTGTAAAGGGAGCTTTTTATGTTGGTAAAAGCAATTGTTTAGAAAAGCAAGGCCTAGATGATATCGACAGGAAACGCCTTTCCAAGGTGGGAAGGGTTTCTCAAGAAAGTCCGGCTAGCAAGGCTAGTTCTTCCGAGGCTTTACAATTAAGTGAAAAACATTTTGATGGGGAAACACCTTTTCCCTCTTCTGCTGCATGGCTTATCTCTGAATGTCTGAAAGCCATGGAGTGCTGGTTGAAACCAGAAATTGAATCATCATGTTATTCCTCATATGGTGTTACTGTTACTGGTGCATCTAATATACTGGCTTTGAGAAAGAAACTGTTTAGGGTAAAGAAAGGATCAAATACGGTTAGAGTTAATAGAACTTCTGCGGCCAGAATGGATACAGACGTAGAGGATAGCCCTGTTACTGGTGATAGCAGTGAAAGGTTTAGAATGCCTGGTATGCTAGAAGCTGAAAGAGATGGTGTGTCCTGTAGAAGTGATTCATTGAACGTTGGCGAGAACAATGTATTATATCATGTACATAGCCATAGTACCAGGGTTTTAGATGATAATCTCATGGATATCGAGTACAGTGGGGAGTCTGCAGCATTTAGTATATGGAAGTTGGCTGATTGGCCTATTATTAATTGCAATATTGGTTCCCAAGCAATATCTTTCCACATCCCCTTGCATCGTTTACTTTCAATTTTGCTAAGAAAAGCATTGAAAGCTTGTTGTCATGTAATTTCACTATCAGACACAACTAACATCGCCCCAGCTAGTAATCCAACTCACCTTCAGGATTATTTCAGGAAAGCTTTGGCTGGGTTACATCCTTTTGTCTTTTCATCTTTTATAATGGAGCATCCTCTTCAGTTGAGGGTCTTTTGTGCTCAAGTTCGTGCTGGCATGTGGCGAAAGAACAGTGATGCCATTTTGAGTTCTGAGGGGTATCGTTCCGTACAACAATTTGACAGGTTGGAGCAAGGACTTGAATCTGACCTGTTTCTGCTGCAATTTTGTGCTGCATTAGCTCCTCCTGATTCTTTTGTTCAGAGGTTGCTGGAAAGATATGGATTATTAAACTATTTGTCTTTAAATCTTGCAGATTATAACGAGTATGAACCTGTGCTAGTACAAGAATTACTCATTCTTATTATACACATTGTTAAAGAACGCCGTTTTTGTGGGTCATCTATGTCAGAAAATCTTCGGAGAGAATTGGTTTATAGATTGGCTATTGGTGATGCTACTCATAGCCAATTAATTAAATCTTTGCCTTGGTATCTATCAGACAGTGATATACTACAAAATACTGTTGACACACTTGCAGCATACTATAATCCATCAGGCATGAAGCAGGGAAAATACTCTCTGCGAAAAGATTACTGGAATGAACTAGACATCTATCATCCTCGTTGGAGCTTAAGAGATCTGCAAATTGCAGAGGAGAGATACTTTCATATCTGTAAAGTTTTTGCTTTGAATGCTCAATTGCCGAGATGGACTCCCATTTCTGAACCTTTAATCTCTATATATAGAATAGCTACTTCACAAACCGTTTTTCAAATTGTTCGAGCAGTCCTAATTTATTCTTATTTCTCCAAGAGACCATCTGTATCTCGTGCTCCTGATGCAGTTCTTATTACAGCATTGCACTTGATTTTCTTAGCATTAGATATCTGTGAAAGACAGCAAATTTTTCATATGGAAGACCAGCAACCTATACTAACCTGTGCTTGTGAAGAATTTGATGTGGGTTCCAGTAGTGCATCTGTATTCTCGAAAAGTGAAAGCATGCTATCATTGTTGGTCTCTTTAATGACAAAGTACAAGGAACAAAATGATGATTTATATACAGAAACAAGACAGTGTAGTGTTTCTTCTTTGATTGAAGCTATTCTGAAGAAGTTTGCACAGTTAAGTACTAATTGTAAGTTTGAGCTCAAACAATTGGCCCCTGGTATCATTTGTAATGTGCCGCAAGCTGGTAGCCCTGCTCAGAGTTTGGCATTTACATCTGATATAGATGAGAGGAAAGAAAAAGTGCGGCAGCGCCAAGCTGCCATTTTGGAAAAAATGAGAGCGGAGCAGTCCAAATTTATTGAGAGTCTCAACACTGATGACTTTGAGCTAGAATCTTGCAAACAGGAGTCTCTTCCAAATGTTGATGATGACAGAAAAGAATCAGCACCCGTTTGTTCTTTATGCCATGAGCCTGATTCTGGAAGCCCTTTATGTTTCTTGGTTCTTTTTCAGAAGTCTAGGCTAGTTAGCTTTGTAAACCAAGGACCTCCGGCATGGGAAAATGCAGGGCAGTCACACAAGGGCGTCAGCTCGGCTGGAAAGCTAAAGTTGATCGATTCAACTGCTACTGTAAAAACCAGTTCACCTCAGTTAGTCCAGATTACAGGTTCTGAAACTAATCAGAATGGGCCTGCAGATGTTGATACACTTTTTGATTTCATTAGAGAGGGAATTCCTGGTATTAGAAGCGTCCAACGACCTAAGCTTTCTCATAGTGTTGAATGTGACTCTTTTTACCTTGAGACTATGGAAGATGATCTTTTTCGCTCTATAGTAGAAGATGTAAAAGAATTCCAGACTTGTTCATGTTCTGCAAGGGGTGAACAAAACTGTTCAACAACCTCTACTGCAGATTCAAATTTAAACAAAGACTGTGATTCTGTGATGCAGGAATATGTTTCCAGTCTATCAAGAGAAACTATTAGACAACACAACAATTTCTTGAACGGTGGTTTACATCTTCAAAATCAATTTTCTTCAAAATTTAAAGCCACAATTACCAGAGTTAATGGAATTGGTCAAAAAGATTGTGATGGTATTCACATTTCCTCTTGTGGGCATGCTGTGCATCAGGACTGCCATGAAAGATATTTAGTATCGTTAAAACAAAGGAGCATTAGCAGGTCGGGATTTAAAGGAGGGCACATTATTGATCCAAATCTGGGGGAACTGCTTTGCCCGTTATGCGGAAGAATTGCAAATTCTGTTCTTCCTGCTTTGCCAACCAATGCAAATAAACTTAGGAAACATATGAAAGTGTCTCCAAAATTTGCTCAAGTGAATAGCACCTTCCAACTTCCTCTAGCATTATCTCTTCTTCAAATTGCAGAAAAAAAGTTGGGGCAAGGGGGATTTCTAAAAATGTCTTCCGGAAAACTGAAAAACTCTATTGAACCAGCTTTGGAGCCTGATAGTCTCAGCCAATTATTTATGCTATGGGACACTCTCAGGTATTCCCTAGTATCAGCAGAAATTGCTGCTCGTGGGAGGCTGAGAGCATCACCTTCTAATTTTAACTTGGAAGCTTTATACAATGAACTTCATTCTCCTGATGGATTTATATTGAATTTGCTACTGCATGTTGCTAAAAACACTTGTAGTTCGAGTTTGATTGTTATGCTCCATAGGTTTAGAGGAATTCAAATTTTGGCAAGGTCTATTTGTTTTGGTATGTCAGAGGATATCATTTTGTCAAATTCAGACAAGCTAAAAGGGTCAGCAAAATTGGAGCATTCTGAAAGTGGAGAATCCTTTTCAGATATTCAATTTTGGAAGAGAGTTACTGATCCAATCCTTGCTCATGATCCATTTTCTTCATTAACGTTGGTTCTCTTCTGTCTTCCATTTCCATTTATGCAATCCAGTGAATTCCTCATGCCTCTCATTCATTTATTCTACACCGTGTCTGTTATTCAGTCGCTCATTGCATGCTATAGCAAAGATTTTATTGATGAGTCCCTTTTCAGTGATTCGCCTCTCTGTGGTTTGTGCAAAGTGATGGGAGAATCTTCACCAGTGAAAAAATACTTTGTTTCAAACTATATTGATCCTTTCTGTCATCCAAAAGAAATGATTCGTAGATTAACATTTCCTTATCTTAGAAGGTGTGCATTACTGTGGAATCTACTACAATCATCTGTGACAGCACCCATATTTGATCAATCCAATATCTGGAAAATATTAAATCGTCATGCAAAGACAGATGCATCGGAGGTTGACAGTGCTGATTACTTGAGAATGGAGCTTGACGGAATAGGGGAGTTGGAGGATTTATTTCTTGTTTCATCTTTTGAAGCAGTTCTTAAGGATGAAGTCGTACATTCCTTAGCATTGAAATGGTGCAAACACTTTAATGATGAATTAAGGTCTAATAAATGTGGTGGTATATTATATTGTACACCTGCTGTACCATTTAAGTTGATGGAGATTCCTCGGATCTACCAAGATCTTTTGCAGAGGTATGTTAAACTTCAGTGTCCTATCTGCAAATCTGTTCCTAAAAAACCTGCTCTATGCTTGCTCTGTGGACAATTATGTTGTCCATCCTGGAATTCCTGTTGCAGGCCAAGTAGATGCTTAAACCATGCAGCATCTTGTGGTGCTGGCATTGGCGTGTTTTTGTTGATTCGGGAAACTTCAGTTTTACTTCAGCGATCTTCAAGGCTAGCTGTTTGGCTATCTCCTTATTTAGATGCTTTTGGGGAAGAGGATGTTGGCATGCAACGAGGAAAACCTTTGTTCTTAAATGTGGAACGCTATGCTGCACTTACATATTTGGTGGCATCTCATGGTTTTGATCGGACATCTGAAGTACTGCGACGGACAACTAATGCTTTTGGCTCTGATTAAATATGTCGAAGATGCTTACATGTTTTGTACTAATGCAAATTTCTGGTTTCCACAAGAGGCGTTCCAGTTTTTACATGTTTGCCATCTCCTATCCGTTTGTATGTCTTCTATGTAGCTTATATACATATTTAATAAAGTGCATATTTGAAATTTATGAAATGTGCAATTATGCTTTTTTTTGAAAGATTTTTTTTTTTTTAATCTGATCTGTCTGTTTGACTGTAAAATGTTTAATATAAATTTGTCAATTGGGCCCTATGACTTTTGCTGGAAACAAATGTGGTCTCAGATTGTTCAAGATGCTTAATTTCGGAAAAATAGGTTCAACATCATCGATAAGCTAGATAGTTGAACTTAAATATATGTTTGAAGCTCAATTTCCTATCAAGCTTTAGAAGTATCTTGTTCAATTATTTTCAGCTCGGTAATGACTTGATCTTATAAATATATAAATGATTATTATATAGGAGTCTTCACATG

Network for GWHGAAEX000285

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02207.19	zf-UBR	126	192	1.30E-19

Protein Sequence

>GWHPAAEX000285
MAGMEIDSSPERDIVLSPRDRIVQRLAMHGISREHLQLFHLGLVSFVRDNKHMISEIVPSILPTILDLMEARKLQNTKFSGISDKFLVKELFEESILWLQWLMFGNDPQESMNSLALSGDGQRAVCGAVWGQNDLAYRCRTCEHDPTCAICVPCFQNSNHTDHDYKIMYTGGGCCDCGDETAWKKGGFCSKHKGTEQIQPLSQELANSIGPVLDSLFMCWKDKIMFAKHKVGEVADHGNAFEKTADGLSLAIVKMLMDFCKCSESLLNFISIRLTACTGLLDDLLIAEKLLDQEVVKRIHELLYKLLGVPAFKYDFAKSFVQYYLTIVKEMINDSDDSYLKRDPMLTTFSVQIFTVPALTIQLVTEVDLLNALLECLKDLFLSCADADGHLLASKLDNMCAATVRLIEDFRYVMSHQEVSAYVAHERPDILKNWIFLLRLVQGMDALKRVTGTHIDDENKHFSAPFVLGYHLGNVNALIVKGAFYVGKSNCLEKQGLDDIDRKRLSKVGRVSQESPASKASSSEALQLSEKHFDGETPFPSSAAWLISECLKAMECWLKPEIESSCYSSYGVTVTGASNILALRKKLFRVKKGSNTVRVNRTSAARMDTDVEDSPVTGDSSERFRMPGMLEAERDGVSCRSDSLNVGENNVLYHVHSHSTRVLDDNLMDIEYSGESAAFSIWKLADWPIINCNIGSQAISFHIPLHRLLSILLRKALKACCHVISLSDTTNIAPASNPTHLQDYFRKALAGLHPFVFSSFIMEHPLQLRVFCAQVRAGMWRKNSDAILSSEGYRSVQQFDRLEQGLESDLFLLQFCAALAPPDSFVQRLLERYGLLNYLSLNLADYNEYEPVLVQELLILIIHIVKERRFCGSSMSENLRRELVYRLAIGDATHSQLIKSLPWYLSDSDILQNTVDTLAAYYNPSGMKQGKYSLRKDYWNELDIYHPRWSLRDLQIAEERYFHICKVFALNAQLPRWTPISEPLISIYRIATSQTVFQIVRAVLIYSYFSKRPSVSRAPDAVLITALHLIFLALDICERQQIFHMEDQQPILTCACEEFDVGSSSASVFSKSESMLSLLVSLMTKYKEQNDDLYTETRQCSVSSLIEAILKKFAQLSTNCKFELKQLAPGIICNVPQAGSPAQSLAFTSDIDERKEKVRQRQAAILEKMRAEQSKFIESLNTDDFELESCKQESLPNVDDDRKESAPVCSLCHEPDSGSPLCFLVLFQKSRLVSFVNQGPPAWENAGQSHKGVSSAGKLKLIDSTATVKTSSPQLVQITGSETNQNGPADVDTLFDFIREGIPGIRSVQRPKLSHSVECDSFYLETMEDDLFRSIVEDVKEFQTCSCSARGEQNCSTTSTADSNLNKDCDSVMQEYVSSLSRETIRQHNNFLNGGLHLQNQFSSKFKATITRVNGIGQKDCDGIHISSCGHAVHQDCHERYLVSLKQRSISRSGFKGGHIIDPNLGELLCPLCGRIANSVLPALPTNANKLRKHMKVSPKFAQVNSTFQLPLALSLLQIAEKKLGQGGFLKMSSGKLKNSIEPALEPDSLSQLFMLWDTLRYSLVSAEIAARGRLRASPSNFNLEALYNELHSPDGFILNLLLHVAKNTCSSSLIVMLHRFRGIQILARSICFGMSEDIILSNSDKLKGSAKLEHSESGESFSDIQFWKRVTDPILAHDPFSSLTLVLFCLPFPFMQSSEFLMPLIHLFYTVSVIQSLIACYSKDFIDESLFSDSPLCGLCKVMGESSPVKKYFVSNYIDPFCHPKEMIRRLTFPYLRRCALLWNLLQSSVTAPIFDQSNIWKILNRHAKTDASEVDSADYLRMELDGIGELEDLFLVSSFEAVLKDEVVHSLALKWCKHFNDELRSNKCGGILYCTPAVPFKLMEIPRIYQDLLQRYVKLQCPICKSVPKKPALCLLCGQLCCPSWNSCCRPSRCLNHAASCGAGIGVFLLIRETSVLLQRSSRLAVWLSPYLDAFGEEDVGMQRGKPLFLNVERYAALTYLVASHGFDRTSEVLRRTTNAFGSD

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	UBR-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	68.610
SRP064423	SRR2545915	Juvenile tuber	49.600
SRP108465	SRR5643513	five period of Gastrodia elata	24.430
	SRR5643514	five period of Gastrodia elata	28.560
	SRR5643515	five period of Gastrodia elata	25.010
	SRR5643524	five period of Gastrodia elata	27.350
	SRR5643525	five period of Gastrodia elata	20.200
	SRR5643528	five period of Gastrodia elata	17.090
	SRR5643658	five period of Gastrodia elata	20.990
	SRR5643659	five period of Gastrodia elata	21.540
	SRR5643660	five period of Gastrodia elata	24.860
	SRR5643661	five period of Gastrodia elata	18.980
	SRR5643662	five period of Gastrodia elata	19.020
	SRR5643663	five period of Gastrodia elata	21.360
	SRR5643664	five period of Gastrodia elata	20.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.020
SRP279888	Gastro	Gastrodia elata tuber	30.39
	Juven	Juvenile tuber	36.27
	Mother_Gastro	Mother tuber of Gastrodia elata	29.12
	Mother_Juven	Mother tuber of Juvenile	33.07