Detail information of GWHGAAEX000287/evm.TU.scaffold_0.459


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|256419512|ref|YP_003120165.1|0ATP-dependent metalloprotease FtsH [Chitinophaga pinensis DSM 2588]
KOGKOG07310AAA+-type ATPase containing the peptidase M41 domain
nrgi|672114486|ref|XP_008777193.1|0PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q0DHL4|FTSH8_ORYSJ0ATP-dependent zinc metalloprotease FTSH 8, mitochondrial (Precursor)
trEMBLtr|M0RUY9|M0RUY9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P24090_001}
TAIRAT2G290800FTSH protease 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142178594721802543-
Transcript Sequence

Network for GWHGAAEX000287

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06480.14FtsH_ext1422501.40E-11
PF00004.28AAA3634958.70E-41
PF01434.17Peptidase_M415597602.70E-73
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016021Cellular Componentintegral component of membrane
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.170
SRR2545915Juvenile tuber39.650
SRP108465SRR5643513five period of Gastrodia elata48.890
SRR5643514five period of Gastrodia elata51.080
SRR5643515five period of Gastrodia elata50.790
SRR5643524five period of Gastrodia elata52.410
SRR5643525five period of Gastrodia elata66.500
SRR5643528five period of Gastrodia elata75.070
SRR5643658five period of Gastrodia elata73.130
SRR5643659five period of Gastrodia elata46.070
SRR5643660five period of Gastrodia elata44.490
SRR5643661five period of Gastrodia elata49.680
SRR5643662five period of Gastrodia elata39.740
SRR5643663five period of Gastrodia elata38.990
SRR5643664five period of Gastrodia elata39.540
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.590
SRR6049655Rhizomagastrodiae_C368-T10_good_144.550
SRR6049656Rhizomagastrodiae_C368-T07_good_159.280
SRR6049657Rhizomagastrodiae_C368-T07_good_158.370
SRR6049658Rhizomagastrodiae_C368-T04_good_158.480
SRR6049659Rhizomagastrodiae_C368-T04_good_171.230
SRR6049660Rhizomagastrodiae_C368-T01_good_157.710
SRR6049661Rhizomagastrodiae_C368-T04_good_161.630
SRR6049662Rhizomagastrodiae_C368-T01_good_163.820
SRR6049663Rhizomagastrodiae_C368-T01_good_164.100
SRR6049664Rhizomagastrodiae_C368-T10_good_169.470
SRR6049665Rhizomagastrodiae_C368-T10_good_169.470
SRP279888GastroGastrodia elata tuber 50.65
JuvenJuvenile tuber55.22
Mother_GastroMother tuber of Gastrodia elata 66.29
Mother_JuvenMother tuber of Juvenile 59.15