Gene detail

Detail information of GWHGAAEX000292/evm.TU.scaffold_0.464

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	5.00E-92	FOG: Predicted E3 ubiquitin ligase
nr	gi\|720020903\|ref\|XP_010262557.1\|	3.73E-141	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]
Swissprot	tr\|P0CH30\|RING1_GOSHI	3.00E-34	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|M0RES0\|M0RES0_MUSAM	8.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P02430_001}
TAIR	AT3G46620	5.00E-92	zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	21848642	21852523	-

Transcript Sequence
>GWHTAAEX000292 ATTATGAACCAGAACCTCTCCGGCTTGGGAAACTGGCCGGTGCTTCCTACACCGCCTTCTCCCTTCTTCTTCTTCCTCCATCTCTCTTTGCTAGGGTTTCGTCTTTCCTTCTCTTCCTTCGGATTTCGGCAAAGAAATTCTTTGTATTTTAGGTCAACTGGTATTTTTCCTGCAAAATATTCTTCCTCTAATCTGCTTCTTTGTTAGAATACTGTTTCCTCGAATCGATCTATTTAATTTGATATACGCTTCAGATCCCTTCTTCTTTCTCTCGTTGTTTGCTAAGGTTTCGGCTTTCCTCATCTTTTCTTGGATCCTCGATGGGTCGGATTGCGGCAAAGAAATTCTATGTTGCCTTTGCTTTCAGTCAACTTGTTTCTTTCTTGTAAAATATTCTTCTTCTAATTTGTTTCTTTGTTAGAGTATTGTATTCTGCCACAAAATATCGACTCGATCTATCGATTTGGATATAATCTTCGGATCATGGCGATGCCGGCGGCATCTTCGTACTGGTGCTACAGCTGCAGCCGCTTCGTCAGGGTCTGGCCGCAGGACGCGATCGTCTGTCCCGACTGCGATGGCGGATTCCTCGAAGAAATCGATACCTCCGATGGAGCTTTACCCGAAACCTTCAGAATGCGCCGTCACCGACGAAATGGAAACGGGAACCGCTCCCCTTTCAACCCTGTCATCGTACTCCGCGGCCCTTCCGATGGCGATAGCTCCGATCGGCCGTCGAACAACGGCTTTGAACTCTACTATGATGACGGAGCGGGGTCCGGCCTTCGCCCTCTTCCTCCGAGCATGTCGGGCTTTCTGATGGGCTCAGGCTTGGAGCGGATTCTGGACCAGCTAGCCCAGATCGAGGTCGGTGGCCTCCCAGGTCGAGGATTTGAGAATCCGCCTGCCTCCAAGGCAGCCGTAGAATCCATGCCGACTATAGAGATAAGTAGTTCTTCTGAAGACTCCAACTGCGCCGTGTGTATGGAGTTGTTTGAGCTTGGGGAAGAAGCTAGAGAAATGCCCTGCAAGCATATCTATCATCAAGACTGCATCCTGCCATGGCTCTCGCTTCGGAATTCCTGCCCTGTGTGTAGGCATGAGATGCCGACTGATGTGAGGGGGCCTGGGATGATGGAACCCAGTGACGAAGATGGCAGTTCTGCTGCTTCCAATGAGGATGAGACTGTGGGGCTTACAATATGGAGGCTTCCTGGTGGAGGCTTTGCAGTTGGAAGGTTCACAGGGGGGATGAGGGCAGGGGAGCGGCAGCTGCCTGTTGTTTACACTGAGATGGATGGCGGGTTTAACTCTGGCGGTGCACCGAGAAGGATTTCCTGGGCTTCCAGAGGTAATAGATCTCAGCAGAGAGGAGGAATTCGGCGATTGTTTCACAATGTGTTCTCATTCTTAGGAAGAAGGAGATCTCCTGCTTCTAACTCCAGTTCCGATGCAGTGTCTCCATCTTCGGAAGAGAGGCCTCCAAGAAGAAGAGTATTTAGGGTTTAACGGTGATGCGATTTCTGGTAGGGTAAAACAGAAGAAGCAATGCATACATTGAAAGTTGCAATCTTTTTTATTAAAAATATCATTCTAATTCTTAGCTCCATCGCATTAGAGGATAAATCATTGTGTAGAAAAGCTGTGGAAGGCTTGCTTTTTTTTTTTATAAATTCAATGTAAATAGAAAGATTGTGGAAAAAAGGTTATGCCTTCCTTTTTTATATGAATATTTCTGTACGCATTGTAGAAGTTTTGAGATGTGGAATCTCGTGGCTATGTAGAATGATATTAAGGGCGGTTAAAAAACATTCAGCTTAAGGTTCTGTAATCTCTCCTAATAATTTCTGGTGGCAATGAATCTTTCATATGTATTCAAGTAATCGTGATGATACTACCTTCAGTTCCAGCAGTATAGTTTGATATCAAAAGTTGAATACTGATGATAGCCTTAGTTTACCTCTACTGGTTCTTATCTGTGGCTTAATGGCTCTATAAAGATTAGATGGTGCACGCAAGCTAAGTTATTATCAAGTTCATTCAGGTGCCTGATTTCTGATTTGAACTGGGATGAATTATCTTAAATATATCCATGTTTTTGTGTGCAGAGAACCTATTTTTAATGAGTGTTTATTTGAATCTGTTTAAATTTACCACTGTGGATGTTGTTGTGGCACGAGTTCAAACCCCACCGCTCAACTTCCAAAAATTAACCACTGTGACAGTTTGTCATGTTGTTGTAGGCTGGAACAGCTTTATCTAATATCTTTGCTGTGATCTTCTTTCCGAAAGAGAACTTGGCTTTTCTTTGTCTTTTACTGAACCCAATAGGCAAGCAAGTGGCATGATTTTGAAAGGTATCTATTCTATCCTTCAAGTTAGGAATCAGTTCTCTTGTGCGGTTGTGACAGCCACTATCTTTCCTTTGGAAAAAGTTGAAAACTGATTATTAAATAAATTCTTTTTTTCTAATCTACCATCCACTGCATTGTATTGTTATTTAGTTTGGTTTGCACTGGCTTTAGATATTTCTGTTTATTTATGTCAGTGAAAGTCTTTATATTAAGTATGTATCCAATTTGCAAATGGTGGTTCAGGGCAGTTAGCAATTGGACCATGGGGCTTCTGTCAATGGTCAAAGGGGAGTTTTTTTTTTTTCATTTTTCTTACTGGGGACCTATTATTTTGCGGCTTCAATTAATGTTTTATTAATTTTCTTGCCTACTCTTTAAGTATATTGCAATCATAGAATGCCAGCTCGAACAATCTTACAAAATTTGTGTTGTCATGTTAATTTTATATTTCATTCCTATTATATATATGAGCCAGGCAATTGATTTCATCTTTATGACAGGCTGTAAAGCCCTATTGCTTTTCATTTCTTATTTGATGAGCTAAAGTAATGTAAGTGATTTGAACTCATGGGCTTATTTAGGTGCATTGGGTTCTTGCTCCTTCATTGGCTTGCTTGTATCTCTTAAAAGCTAATAATGGCAAGAGATTTGAACTTATGGGCTGATTTACATCCTTGGCTCTAAATATAAATGGCTCTTACTGTTTGCCTTTTAGGGCTAAGTTCTTGATTTTTCCCTTCAGAAGCTTTATTTAACTTCAATTCTTGGAATAAACAACTTTTAACTTCAATTTCTCATTCATAAATATTTTGGTCAGTCCTTGCATGTACTAGAAAGAATGCTTTCATGATATTATATATTATATGGATGAAACTTTTTGAATTGGAAAATGCTTTTATTGACGCACAACTCTCACCATTTGTTGTGCGTTTGGATTGTTATTTAAAGATCAAAATAACTTTTATAAAAAAAACTGATTTTGCGAGTACTTTTAATCTGTTCTAATCAAATGCATGTATAAATGATGAGAAATATGTGAGTTGTAAAAGAACTTGTGCTTCTGAGGATTCTAATTGATCTCTCTGTGTGCTGAATATATGCCACACTCATCATCCTTAGCATTACAACAGTGCATTTCTGAAAAATATTTATGTTTAGCAAATCAGTAGAGCATCACATCTGCTTTATTTTTGTATTATTTTATGATGTTAGGTATTGAGCATTAAACAGTTTATTATGTCTTCACTCCCCAAAGACTTGGATTCTGTCTGCATCTTTTATTTTAACCTCATGAAATTCTTAAAAAGATTTAGGAAAACAACGCCAAAACTATGGCAGAGCTTTTGATCTAAACATTGACTTTTTTCATTCACGAAGAAGCCTTGATTTGATAAAGCATAGGGATGCCTGCAATGATTAAGGGTTTTTCTCTCTTTGCTTTATTTGTCAATTTTATTTTATTCTTGAATCACCAAAATTATGACCTTTCTTTTCATAGCACTTAAATATATAAAATGTACATATCAAG

Network for GWHGAAEX000292

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.5	zinc_ribbon_9	8	39	3.90E-15
PF13639.5	zf-RING_2	163	205	3.40E-12
PF06547.11	DUF1117	236	332	2.20E-41

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0061630	Molecular Function	ubiquitin protein ligase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	147.410
SRP064423	SRR2545915	Juvenile tuber	99.640
SRP108465	SRR5643513	five period of Gastrodia elata	94.490
	SRR5643514	five period of Gastrodia elata	57.910
	SRR5643515	five period of Gastrodia elata	186.270
	SRR5643524	five period of Gastrodia elata	36.160
	SRR5643525	five period of Gastrodia elata	385.200
	SRR5643528	five period of Gastrodia elata	244.500
	SRR5643658	five period of Gastrodia elata	182.050
	SRR5643659	five period of Gastrodia elata	187.300
	SRR5643660	five period of Gastrodia elata	51.630
	SRR5643661	five period of Gastrodia elata	97.080
	SRR5643662	five period of Gastrodia elata	205.650
	SRR5643663	five period of Gastrodia elata	99.230
	SRR5643664	five period of Gastrodia elata	649.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	395.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	191.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	209.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	355.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	345.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	566.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	520.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	330.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	137.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	334.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	173.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	173.810
SRP279888	Gastro	Gastrodia elata tuber	80.72
	Juven	Juvenile tuber	40.31
	Mother_Gastro	Mother tuber of Gastrodia elata	334.02
	Mother_Juven	Mother tuber of Juvenile	193.10