Detail information of GWHGAAEX000296/evm.TU.scaffold_0.470


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29090Vacuolar H+-ATPase V1 sector, subunit C
nrgi|743797639|ref|XP_010925033.1|0PREDICTED: V-type proton ATPase subunit C-like [Elaeis guineensis]
Swissprottr|Q9SDS7|VATC_ARATH0V-type proton ATPase subunit C
trEMBLtr|A0A067E0G2|A0A067E0G2_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO47360.1}
TAIRAT1G128400vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142191612621957627+
Transcript Sequence

Network for GWHGAAEX000296

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03223.14V-ATPase_C53661.70E-123
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02148ATPeV1C, ATP6C Metabolic pathways map01100
Oxidative phosphorylationmap00190
mTOR signaling pathwaymap04150
Phagosomemap04145
Collecting duct acid secretionmap04966
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:1902600Biological Processhydrogen ion transmembrane transport
GO:0015078Molecular Functionhydrogen ion transmembrane transporter activity
GO:0033180Cellular Componentproton-transporting V-type ATPase, V1 domain

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.440
SRR2545915Juvenile tuber29.040
SRP108465SRR5643513five period of Gastrodia elata26.470
SRR5643514five period of Gastrodia elata32.650
SRR5643515five period of Gastrodia elata27.670
SRR5643524five period of Gastrodia elata31.560
SRR5643525five period of Gastrodia elata26.070
SRR5643528five period of Gastrodia elata47.800
SRR5643658five period of Gastrodia elata33.770
SRR5643659five period of Gastrodia elata29.340
SRR5643660five period of Gastrodia elata27.470
SRR5643661five period of Gastrodia elata29.020
SRR5643662five period of Gastrodia elata33.060
SRR5643663five period of Gastrodia elata33.370
SRR5643664five period of Gastrodia elata25.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.340
SRR6049655Rhizomagastrodiae_C368-T10_good_129.090
SRR6049656Rhizomagastrodiae_C368-T07_good_131.740
SRR6049657Rhizomagastrodiae_C368-T07_good_121.180
SRR6049658Rhizomagastrodiae_C368-T04_good_118.120
SRR6049659Rhizomagastrodiae_C368-T04_good_116.230
SRR6049660Rhizomagastrodiae_C368-T01_good_122.720
SRR6049661Rhizomagastrodiae_C368-T04_good_122.380
SRR6049662Rhizomagastrodiae_C368-T01_good_143.920
SRR6049663Rhizomagastrodiae_C368-T01_good_130.430
SRR6049664Rhizomagastrodiae_C368-T10_good_140.910
SRR6049665Rhizomagastrodiae_C368-T10_good_140.910
SRP279888GastroGastrodia elata tuber 32.33
JuvenJuvenile tuber23.92
Mother_GastroMother tuber of Gastrodia elata 39.94
Mother_JuvenMother tuber of Juvenile 40.38