Gene detail

Detail information of GWHGAAEX000299/evm.TU.scaffold_0.475

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15806543\|ref\|NP_295256.1\|	3.00E-23	hypothetical protein DR_1533 [Deinococcus radiodurans R1]
KOG	KOG1082	7.00E-123	Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
nr	gi\|695048608\|ref\|XP_009412217.1\|	0	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8VZ17\|SUVH6_ARATH	0	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6
trEMBL	tr\|A5BGK9\|A5BGK9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN76871.1}
TAIR	AT2G22740_2	7.00E-123	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	21980147	21998213	-

Transcript Sequence
>GWHTAAEX000299 GCCTTTTTGCCACCACGCGCGGCGGCCATGCAGTCGTTCTCGGCGAGCTGAGAGCTACTGATACAGTGGAAATGGAGCTATATAGAAGCCAACTAAATCCCTAGATAACCTATTCGTTTTTCTTGGACATTGACAGAGGCACCATCGCCGTTCTTTCTCCGGCGACGAAGTACTAGCCTGCATTGCGACTTGAATCTCCCCATCCTGCTTTGCGTATTATATCAGTTAGTCTATTTTCTAGCATTCAATTCCAGTTTTATTGTTCTGTTTCTGCTCGCATTGCTTTTGATTTCTAGTTCTTGATTCTATTGTTTCTTGCTTGGGTGATTGAATCTTTCCATTACTGAAAAGGATGCCGCAGGTGCTGCCGGAAACTCTTCCGAAATATAAGCGGCCGAATGCCTTCGCAAACCGCGATTTCCCGCCTGGATGTGGCCCTAATGCCGTTAGACCGCCCAAAAATCCAACAGAAGAGGCTTTTTCTCCGGTGGGGTTGCACAGCGCAAATGAAACCCATGCCTCGACTGTTTGTGATAGAACCATCGCCGCTTTTTCTGTTCCAAAAAAAAAGGGATTGGATGCTTTTGTTTCGGTGGGGGCTTTGCAGCCAATGAGGATTGATCTTACTAATAGAAATATATATGTTACACCTGAAACTAATCCTGAGAACGTAAAAGTGCAGGAATTAGTGAGGGCTTTGCAGCCAATGAGGATTGATCTTACTAGTAGAAATATATATGTTACACCTGAAAATAATCCTGAGAAGCTAAAAGTGCAGGAATTAGTGAGAGAGAGCTCACAGCTTCCCATATTGCTGAAGTATTGCTACTCTTCAAAGATGTATGGGCCTCCAAAGCGAAGAAAAATTTCTGCTGACCGCGAATTTCCATCTGAATGCGGGCCAAATTCCAGCAATATCAACAAACATGCTGCAAATCACTTCAAGAAGAACCCTATTTTAAAACAGACAGAAACTGTAAGGTGCTCAAGGCTGGTTCCATATACCAAGCATATTTTGCGCCCAAAAAATATGCCTTTAGTGAAGCAGTCAATAGTGATGGATAAACCAGCAGAAGTTACTGATGCTGAAAATCATAAGAAGGTTGCAATTTCTGAAAGGGGTATGGTTGTGCATAGAAATGGTTCCACAGTAGCGAAAGAAAAAGAGAAAAACATTGGAGAAAGTGTTTTGGCTCAATCAAATTCCAACAAAAAACGATATGGTAGTGGGACGCAAAACCCTATTTGTCGTGTCCGCATCAAATCCTCCATGTATGGTTTTAGTACAGTCATTGTTCGTTCTATTTCTGAAAAAGCTTTAGATGGCTGCACTCCTGATAAAGGCAAATCTTTGGAAGAGTATGGGGAGAGAATGATTAGTCGGTCTCTTTTATCTGCTGAAAAATATTCTTGCAAAGATTTAAATAAGTTTGATGAAGTTGGTTCTACTTCTATTTTTCCTAAAATCAAAATAAAAAAGAAGGGTTTAGTAGAAAGAAAATCCCAACAAGACAAGAAAAACCTTATTAATGATATTGATCATATTCAAGAGAAAGACAGAAGTCAGAGAGCATTAAGTGCATTTCAAAAACCCAAAAAAGTGAGCGTCACAAAAACACCTTTTGCCCCATCTAGGTTGTGTTTGAAAAGCAGTGATAGTGTAGAAATTTTTGCTCGGCACCGGGTTAAAAGGGCCTTGCGAATTTTCCAGAGTGCATGCCGGAAACTCTTGCATTTGAAAAGGCCGGATAAATTATTTAGGGTTGATTTGGAGGCTACTAAAATGCTAAAAAGGTATGGTGAATGGTTGAGCAATGGCCAACCAATAATTGGGCATGTGCCTGGAGTTGAAATTGGTGATGAATTTCATTACAGGGTGGAGCTCTCATTAATCGGCCTTCACCGTCCTTTTCAGAACGGCATAGCTGTATCAAAACAAAATGGTATTCCGGTAGCGGCTAGCGTTGTAGCATCCGGTGGATATGAGGATGATGTGGATTGCTCAGATGTCTTGATTTATTCTGGTTCAGGTGGTAAGAAAGCGGCTGGCGGAGATAAACAGCCAGGAGACCAAAAACTAGTGCGCGGTAACTTGGCATTAAAAAACTGCATAGATGCTCAGACGCCGGTGAGGGTTATTCATGGTTTTAAAGAGAAAGATGATCCCCATGATTCGAAGGGCAAGCTAGTCTCGACATTCACTTATGCAGGATTGTATTATGTGGAATCATACTGGCAGGAGAGAGGCCCTCATGGGTTCAAAGTTTTCAAGTTCCAATTGAAAAGGAAGGCCGGGCAGCCAGAGCTTGCTTTCAAAGAACTCAAAAGATCAAAGATGTTACAATTTCGTGAAGGCCTCTGTGCTAATGATATATCACGGGGAAAGGAGAAAATTCCTATATCTGTAGTTAATACAGTTGACAATGACCGTCCAAGGCCTTTTAAGTATATTGCCAAGAACATTTACCCAGCGTATTTTGTCAGGAAACCTCCAGTGGGCTGTGGTTGCATTGATAGCTGTTCAGATTCAAAGAAGTGTGCTTGTGCACTTAAAAATGGTGGGGAAATTCCTTATAACTTCAGTGGTTCCATTGTTCAAGCAAAGCCGCTTGTTTACGAGTGTGGGCCTTCTTGTAAATGTCCTCCTTCGTGCCACAACAGGGTCAGCCAACATGGCATCAGAATTGCATTGGAGGTTTTTAAAACCAAGGACAGAGGCTGGGGTGTCAGATCCTTGAAATCCATTTCATCCGGCAGCTTTATATGCGGGTATATAGGAGAGCTGCTTCAAGAAGGCGAGGCCGAGCAGAGGATTAATGATGAATACCTTTTCGACATTGGTCATAATTATGATGATCTTTCTCTATGGGGAAACCTTCCAAATCTTATTCCAGAGCTGCAATCTAGATCTTCATGTGATGGTGTAGAAGATGCGGGTTTTACAATTGATGCAGCTGAATATGGAAACGTCGGGCGATTTGTTAACCATAGTTGCTCTCCCAATCTGTACGCGCAGAATGTTCTGTATGACCATGATGACAAGAAAATGCCTCATGTCATGTTTTTTGCTGTTGATAACATCCCACCATTGCAAGAGTTAACTTATCACTACAATTATGCGATAGATCAAGTTCGTGATTCTGAAGGAAACGCAAAGAAGAAAGCTTGTCATTGTGGTTCTCCGGAATGTCGTGGCAGGCTTTACTAAGACTCGATGTTTTCATATGCTGGTGTTCTTTCAGATTATGAGCTTGGTTATAACTAAAGAGGTTAGTTCTTGTATGGGGAGAAAACAGGGAGAGCGTTGCATATAGCTTTTTTTTTGCCGCAGGGCGGAGCTTTTGCGTGATGCACTTTTTTGCTGTCTTAAGCTTACATCGCAGCAGGTATTGTACCTATTTTCTAAGTTTTCTGTCTCTCTCTCTCTCTCTCTC

Network for GWHGAAEX000299

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.16	SAD_SRA	493	649	4.50E-46
PF05033.15	Pre-SET	674	770	1.10E-21
PF00856.27	SET	789	921	1.70E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
K11420	EHMT	Metabolic pathways	map01100
		Lysine degradation	map00310
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0016571	Biological Process	histone methylation
GO:0034968	Biological Process	histone lysine methylation
GO:0008270	Molecular Function	zinc ion binding
GO:0018024	Molecular Function	histone-lysine N-methyltransferase activity
GO:0005515	Molecular Function	protein binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.490
SRP064423	SRR2545915	Juvenile tuber	0.100
SRP108465	SRR5643513	five period of Gastrodia elata	0.280
	SRR5643514	five period of Gastrodia elata	0.490
	SRR5643515	five period of Gastrodia elata	0.200
	SRR5643524	five period of Gastrodia elata	0.640
	SRR5643525	five period of Gastrodia elata	0.140
	SRR5643528	five period of Gastrodia elata	0.150
	SRR5643658	five period of Gastrodia elata	0.120
	SRR5643659	five period of Gastrodia elata	0.140
	SRR5643660	five period of Gastrodia elata	0.160
	SRR5643661	five period of Gastrodia elata	0.180
	SRR5643662	five period of Gastrodia elata	0.140
	SRR5643663	five period of Gastrodia elata	0.090
	SRR5643664	five period of Gastrodia elata	0.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.820
SRP279888	Gastro	Gastrodia elata tuber	0.12
	Juven	Juvenile tuber	0.31
	Mother_Gastro	Mother tuber of Gastrodia elata	0.24
	Mother_Juven	Mother tuber of Juvenile	0.22