Detail information of GWHGAAEX000301/evm.TU.scaffold_0.482
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|34498467|ref|NP_902682.1| | 2.00E-06 | serine carboxypeptidase [Chromobacterium violaceum ATCC 12472] |
| KOG | KOG1282 | 7.00E-29 | Serine carboxypeptidases (lysosomal cathepsin A) |
| nr | gi|225424230|ref|XP_002284364.1| | 1.31E-42 | PREDICTED: serine carboxypeptidase-like 50 [Vitis vinifera] |
| Swissprot | tr|Q9M9Q6|SCP50_ARATH | 2.00E-29 | Serine carboxypeptidase-like 50 (Precursor) |
| trEMBL | tr|F6HFI0|F6HFI0_VITVI | 5.00E-43 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
| TAIR | AT1G15000 | 7.00E-29 | serine carboxypeptidase-like 50 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 22442622 | 22443233 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000301
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module9 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00450.21 | Peptidase_S10 | 43 | 189 | 4.50E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004185 | Molecular Function | serine-type carboxypeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.960 |
| SRR2545915 | Juvenile tuber | 5.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.810 |
| SRR5643514 | five period of Gastrodia elata | 9.370 | |
| SRR5643515 | five period of Gastrodia elata | 17.060 | |
| SRR5643524 | five period of Gastrodia elata | 7.930 | |
| SRR5643525 | five period of Gastrodia elata | 1.130 | |
| SRR5643528 | five period of Gastrodia elata | 0.910 | |
| SRR5643658 | five period of Gastrodia elata | 0.550 | |
| SRR5643659 | five period of Gastrodia elata | 9.750 | |
| SRR5643660 | five period of Gastrodia elata | 9.600 | |
| SRR5643661 | five period of Gastrodia elata | 15.870 | |
| SRR5643662 | five period of Gastrodia elata | 35.780 | |
| SRR5643663 | five period of Gastrodia elata | 16.380 | |
| SRR5643664 | five period of Gastrodia elata | 47.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 70.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 67.10 |
| Juven | Juvenile tuber | 39.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.61 | |
| Mother_Juven | Mother tuber of Juvenile | 39.38 |