Detail information of GWHGAAEX000302/evm.TU.scaffold_0.483
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220922992|ref|YP_002498294.1| | 1.00E-06 | protein serine/threonine phosphatase [Methylobacterium nodulans ORS 2060] |
| KOG | KOG0698 | 4.00E-156 | Serine/threonine protein phosphatase |
| nr | gi|672138986|ref|XP_008793265.1| | 0 | PREDICTED: probable protein phosphatase 2C 50 [Phoenix dactylifera] |
| Swissprot | tr|Q0JLP9|P2C06_ORYSJ | 2.00E-167 | Probable protein phosphatase 2C 6 |
| trEMBL | tr|M0WJS5|M0WJS5_HORVD | 2.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_52176.1} |
| TAIR | AT1G72770 | 4.00E-156 | homology to ABI1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 22484176 | 22489738 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000302
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00481.20 | PP2C | 217 | 499 | 1.60E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14497 | PP2C | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043169 | Molecular Function | cation binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 121.820 |
| SRR2545915 | Juvenile tuber | 154.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 139.250 |
| SRR5643514 | five period of Gastrodia elata | 112.430 | |
| SRR5643515 | five period of Gastrodia elata | 105.910 | |
| SRR5643524 | five period of Gastrodia elata | 95.530 | |
| SRR5643525 | five period of Gastrodia elata | 256.970 | |
| SRR5643528 | five period of Gastrodia elata | 146.280 | |
| SRR5643658 | five period of Gastrodia elata | 458.150 | |
| SRR5643659 | five period of Gastrodia elata | 137.210 | |
| SRR5643660 | five period of Gastrodia elata | 142.020 | |
| SRR5643661 | five period of Gastrodia elata | 135.540 | |
| SRR5643662 | five period of Gastrodia elata | 100.070 | |
| SRR5643663 | five period of Gastrodia elata | 100.410 | |
| SRR5643664 | five period of Gastrodia elata | 116.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 137.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 76.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 132.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 155.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 150.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 179.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 142.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 143.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 101.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 113.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 119.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 119.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 79.48 |
| Juven | Juvenile tuber | 135.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 102.47 | |
| Mother_Juven | Mother tuber of Juvenile | 88.39 |