Detail information of GWHGAAEX000303/evm.TU.scaffold_0.484


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|312136521|ref|YP_004003858.1|4.00E-13kh domain-containing protein [Methanothermus fervidus DSM 2088]
KOGKOG28742.00E-163rRNA processing protein
nrgi|747083520|ref|XP_011089129.1|0PREDICTED: KRR1 small subunit processome component homolog [Sesamum indicum]
trEMBLtr|M0SMA3|M0SMA3_MUSAM0KRR1 small subunit processome component {ECO:0000256|PIRNR:PIRNR006515}
TAIRAT5G084202.00E-163RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142249681122512993+
Transcript Sequence

Network for GWHGAAEX000303

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms67.470
SRR2545915Juvenile tuber71.000
SRP108465SRR5643513five period of Gastrodia elata59.770
SRR5643514five period of Gastrodia elata68.300
SRR5643515five period of Gastrodia elata62.770
SRR5643524five period of Gastrodia elata69.010
SRR5643525five period of Gastrodia elata84.390
SRR5643528five period of Gastrodia elata73.980
SRR5643658five period of Gastrodia elata81.520
SRR5643659five period of Gastrodia elata57.550
SRR5643660five period of Gastrodia elata63.600
SRR5643661five period of Gastrodia elata59.610
SRR5643662five period of Gastrodia elata53.730
SRR5643663five period of Gastrodia elata53.050
SRR5643664five period of Gastrodia elata54.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_157.900
SRR6049655Rhizomagastrodiae_C368-T10_good_176.000
SRR6049656Rhizomagastrodiae_C368-T07_good_161.720
SRR6049657Rhizomagastrodiae_C368-T07_good_154.160
SRR6049658Rhizomagastrodiae_C368-T04_good_168.190
SRR6049659Rhizomagastrodiae_C368-T04_good_169.880
SRR6049660Rhizomagastrodiae_C368-T01_good_161.280
SRR6049661Rhizomagastrodiae_C368-T04_good_163.900
SRR6049662Rhizomagastrodiae_C368-T01_good_165.000
SRR6049663Rhizomagastrodiae_C368-T01_good_166.820
SRR6049664Rhizomagastrodiae_C368-T10_good_165.270
SRR6049665Rhizomagastrodiae_C368-T10_good_165.270
SRP279888GastroGastrodia elata tuber 81.38
JuvenJuvenile tuber66.26
Mother_GastroMother tuber of Gastrodia elata 69.19
Mother_JuvenMother tuber of Juvenile 45.24