Detail information of GWHGAAEX000305/evm.TU.scaffold_0.487
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 6.00E-25 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0394 | 1.00E-121 | Ras-related GTPase |
| nr | gi|743755135|ref|XP_010935166.1| | 8.69E-135 | PREDICTED: ras-related protein Rab7 [Elaeis guineensis] |
| Swissprot | tr|Q43463|RAB7_SOYBN | 1.00E-126 | Ras-related protein Rab7 |
| trEMBL | tr|M0TK80|M0TK80_MUSAM | 1.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23940_001} |
| TAIR | AT4G09720 | 1.00E-121 | RAB GTPase homolog G3A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 22563726 | 22587528 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000305
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 10 | 176 | 4.60E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07897 | RAB7A | Endocytosis | map04144 |
| Phagosome | map04145 | ||
| Autophagy - animal | map04140 | ||
| Autophagy - yeast | map04138 | ||
| Mitophagy - animal | map04137 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.530 |
| SRR2545915 | Juvenile tuber | 35.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.340 |
| SRR5643514 | five period of Gastrodia elata | 36.550 | |
| SRR5643515 | five period of Gastrodia elata | 32.100 | |
| SRR5643524 | five period of Gastrodia elata | 31.060 | |
| SRR5643525 | five period of Gastrodia elata | 43.350 | |
| SRR5643528 | five period of Gastrodia elata | 45.230 | |
| SRR5643658 | five period of Gastrodia elata | 48.260 | |
| SRR5643659 | five period of Gastrodia elata | 28.540 | |
| SRR5643660 | five period of Gastrodia elata | 27.220 | |
| SRR5643661 | five period of Gastrodia elata | 27.240 | |
| SRR5643662 | five period of Gastrodia elata | 29.930 | |
| SRR5643663 | five period of Gastrodia elata | 29.900 | |
| SRR5643664 | five period of Gastrodia elata | 27.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 46.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.23 |
| Juven | Juvenile tuber | 37.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.86 | |
| Mother_Juven | Mother tuber of Juvenile | 34.71 |