Detail information of GWHGAAEX000306/evm.TU.scaffold_0.490
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|339627608|ref|YP_004719251.1| | 2.00E-28 | aldehyde dehydrogenase [Sulfobacillus acidophilus TPY] |
| KOG | KOG2451 | 0 | Aldehyde dehydrogenase |
| nr | gi|743755117|ref|XP_010934233.1| | 0 | PREDICTED: probable aldehyde dehydrogenase isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q40255|ALDH_LINUS | 0 | Probable aldehyde dehydrogenase |
| trEMBL | tr|K3Z4P0|K3Z4P0_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si021508m} |
| TAIR | AT5G62530 | 0 | aldehyde dehydrogenase 12A1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 22689310 | 22773572 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000306
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00171.21 | Aldedh | 72 | 498 | 2.40E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00294 | E1.2.1.88 | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 | ||
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016620 | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 46.640 |
| SRR2545915 | Juvenile tuber | 45.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.840 |
| SRR5643514 | five period of Gastrodia elata | 34.570 | |
| SRR5643515 | five period of Gastrodia elata | 29.470 | |
| SRR5643524 | five period of Gastrodia elata | 32.200 | |
| SRR5643525 | five period of Gastrodia elata | 32.390 | |
| SRR5643528 | five period of Gastrodia elata | 30.130 | |
| SRR5643658 | five period of Gastrodia elata | 35.820 | |
| SRR5643659 | five period of Gastrodia elata | 22.280 | |
| SRR5643660 | five period of Gastrodia elata | 25.020 | |
| SRR5643661 | five period of Gastrodia elata | 24.200 | |
| SRR5643662 | five period of Gastrodia elata | 26.000 | |
| SRR5643663 | five period of Gastrodia elata | 28.140 | |
| SRR5643664 | five period of Gastrodia elata | 28.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.41 |
| Juven | Juvenile tuber | 37.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.52 | |
| Mother_Juven | Mother tuber of Juvenile | 44.96 |