Detail information of GWHGAAEX000318/evm.TU.scaffold_0.511
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|478482197|ref|YP_007712847.1| | 6.00E-24 | DNA repair helicase Rad3 [Candidatus Methanomethylophilus alvus Mx1201] |
| KOG | KOG1132 | 0 | Helicase of the DEAD superfamily |
| nr | gi|672190694|ref|XP_008775316.1| | 0 | PREDICTED: regulator of telomere elongation helicase 1 homolog [Phoenix dactylifera] |
| Swissprot | tr|Q8W4M7|ERCC2_ARATH | 1.00E-48 | DNA repair helicase UVH6 |
| trEMBL | tr|M0SGC5|M0SGC5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P20590_001} |
| TAIR | AT1G79950 | 0 | RAD3-like DNA-binding helicase protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000014 | 23460884 | 23573500 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000318
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06733.14 | DEAD_2 | 100 | 261 | 1.10E-49 |
| PF13307.5 | Helicase_C_2 | 513 | 708 | 9.70E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0016818 | Molecular Function | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
| GO:0003678 | Molecular Function | DNA helicase activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.390 |
| SRR2545915 | Juvenile tuber | 3.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.050 |
| SRR5643514 | five period of Gastrodia elata | 2.540 | |
| SRR5643515 | five period of Gastrodia elata | 2.820 | |
| SRR5643524 | five period of Gastrodia elata | 2.380 | |
| SRR5643525 | five period of Gastrodia elata | 3.570 | |
| SRR5643528 | five period of Gastrodia elata | 2.740 | |
| SRR5643658 | five period of Gastrodia elata | 2.080 | |
| SRR5643659 | five period of Gastrodia elata | 4.680 | |
| SRR5643660 | five period of Gastrodia elata | 3.740 | |
| SRR5643661 | five period of Gastrodia elata | 3.090 | |
| SRR5643662 | five period of Gastrodia elata | 3.230 | |
| SRR5643663 | five period of Gastrodia elata | 3.570 | |
| SRR5643664 | five period of Gastrodia elata | 2.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.74 |
| Juven | Juvenile tuber | 3.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.24 | |
| Mother_Juven | Mother tuber of Juvenile | 4.83 |