Detail information of GWHGAAEX000322/evm.TU.scaffold_0.517


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24760Uncharacterized conserved protein
nrgi|743755359|ref|XP_010906463.1|0PREDICTED: zinc finger CCCH domain-containing protein 59 isoform X1 [Elaeis guineensis]
Swissprottr|Q69NK8|C3H59_ORYSJ0Zinc finger CCCH domain-containing protein 59
trEMBLtr|M0TMV6|M0TMV6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P05530_001}
TAIRAT5G569000CwfJ-like family protein / zinc finger (CCCH-type) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142381985923865388-
Transcript Sequence

Network for GWHGAAEX000322

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04677.14CwfJ_C_13604733.40E-35
PF04676.13CwfJ_C_25145821.10E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.670
SRR2545915Juvenile tuber13.280
SRP108465SRR5643513five period of Gastrodia elata8.710
SRR5643514five period of Gastrodia elata8.650
SRR5643515five period of Gastrodia elata8.500
SRR5643524five period of Gastrodia elata6.890
SRR5643525five period of Gastrodia elata6.890
SRR5643528five period of Gastrodia elata8.510
SRR5643658five period of Gastrodia elata7.200
SRR5643659five period of Gastrodia elata6.830
SRR5643660five period of Gastrodia elata7.550
SRR5643661five period of Gastrodia elata6.870
SRR5643662five period of Gastrodia elata8.550
SRR5643663five period of Gastrodia elata7.240
SRR5643664five period of Gastrodia elata8.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.630
SRR6049655Rhizomagastrodiae_C368-T10_good_113.990
SRR6049656Rhizomagastrodiae_C368-T07_good_112.720
SRR6049657Rhizomagastrodiae_C368-T07_good_19.630
SRR6049658Rhizomagastrodiae_C368-T04_good_110.450
SRR6049659Rhizomagastrodiae_C368-T04_good_111.250
SRR6049660Rhizomagastrodiae_C368-T01_good_110.980
SRR6049661Rhizomagastrodiae_C368-T04_good_112.860
SRR6049662Rhizomagastrodiae_C368-T01_good_112.130
SRR6049663Rhizomagastrodiae_C368-T01_good_113.130
SRR6049664Rhizomagastrodiae_C368-T10_good_111.820
SRR6049665Rhizomagastrodiae_C368-T10_good_111.820
SRP279888GastroGastrodia elata tuber 8.52
JuvenJuvenile tuber6.80
Mother_GastroMother tuber of Gastrodia elata 7.71
Mother_JuvenMother tuber of Juvenile 7.43