Gene detail

Detail information of GWHGAAEX000324/evm.TU.scaffold_0.519_evm.TU.scaffold_0.520

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|339502145\|ref\|YP_004689565.1\|	7.00E-33	alcohol dehydrogenase [Roseobacter litoralis Och 149]
KOG	KOG1238	0	Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family)
nr	gi\|672143096\|ref\|XP_008795416.1\|	0	PREDICTED: protein HOTHEAD-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9S746\|HTH_ARATH	0	Protein HOTHEAD (Precursor)
trEMBL	tr\|I1IPM8\|I1IPM8_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G28870.1}
TAIR	AT1G72970	0	Glucose-methanol-choline (GMC) oxidoreductase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	23953739	23959202	+

Transcript Sequence
>GWHTAAEX000324 GAAGAAGAAGAAGAAGAAGAAGATTGGTTATAGGAGGAATAAGCTCCATACATGGCTCCAAATTTTGGGGAGAAGTTCCTCAAAATTTTCCTCATTCTTTGCATTTTCAGGCATTCTCAAGGGAGTGAGTTCACAGGAAGGAATTATCCATATCTGAGGGCGGCCAGCAGCTTCTCATCGGGGCGGCGGCCTCCGAATGGAGGATACGAGTACATTATAGTGGGCGGAGGGACGGCTGGCTGCCCTTTAGCAGCTACTCTGTCCCAGAATTACAGTGTGCTGCTTTTGGAGAGGGGTGGCTCCCCTTACGGAAACGTGAATGTGTCTCTCCTTCAAAACTTCCACATTTCTCTTGTTGACAGCTCTCCTCAGTCTCCTTCACAGGCATTCATTTCTACAGATGGGGTTATCAATGCAAGAGCAAGGATTTTGGGAGGTGGGACTTGCATCAATGCTGGATTCTACACGAGGGCAAGCCCAAGCTTTGTGAGGAAGGCTGGTTGGGATGCAGAGCTGGTGAAGGAATCATACCAATGGGTGGAAAAACAGATAGTACACTGGCCGGAGCTCGCGCCATGGCAGGCTGCCCTCAGGGACGGGCTCCTCCAAGCTGGCGTCTCCCCTTTCAACGGATACACGTACGATCACATCTACGGCACCAAAGTGGGCGGCACCATCTTCGACAGGAATGGCTTCCGGCGCACGGCCGCCGACCTCCTGGCCTCAGGCAATCCCAGGAATCTCACAGTGCTGCTTCACGCCACGGTCTTGAGAATCCTGCTCAGAACTAAAGGTTCGCGGCCACGGGCAGTTGGGGTGCTCTTCAAGGATGAGAAGGGGAAGCGGCACAGGGCAATGCTGGGCGGGGCTCTTCAAGGAGAGGTCGTCTTGTCTTCTGGGGCGCTGGGAAGCCCTCAGCTGCTTCTCCTGAGCGGGGTCGGACCTGAGAAGGATCTTAAGAAGATGGGAATTCGAGTTGTTCTTCATAACCCCCATGTGGGAAAGGGAATGGCCGACAATCCCATGAACTCCATCTTCATTCCCACGAAGAAGCCCGTCGTGCAGTCCCTCATACAGAGCGTCGGAATCACAAAGGTGGGATCTTTCATTGAGGCCAGCAGCGGCTTTGGTCAGTCTTCTAATAGCATCCACTGCCATCATGGCATCATGTCTGCTGAGATAGGGCAGCTGTCGGTCTTACCGCCCAGACTCCGAAGCATTGAAGCTGCGCAGAGTTACGCGAGATCGAAGAGGGATCTCCCTCGAGAGGCATTCCGAGGCGGCTTCATCTTAGGGAAGGTCGACGGGCCCTTATCGAGAGGCTACCTCAGTCTCTCCGACACGAACGCCGACACAAACCCGAACGTGACCTTCAACTACTTCGCCCACAGCCGCGACCTCAGCCGCTGCGTGTTCGGCGTTCGAACCATCCAGCGAATCGCGCGCACGCGGCAATTCGCCAAGCTGGCGCAGCGGGATTCCCTCTCCCTCGAGAGGCTTCTGAACCTGAGCGTTAGGGCGAACTTTAACCTGATTCCGAAGCACGCCAACGACATCTCCTCGCTCCGGCAGTTCTGCAAGGACACCGTACTGACCATCTGGCACTACCACGGAGGCTGCCACGTGGACAAGGTCGTCGATAGGGAGTACAGGCTTCTCGGCGCTGAGGGAATGCGGGTCATCGATGGATCGGTCTACGCTTCTTCGCCAGGAACCAATCCTCAAGCGACAGTGATGATGATGGGAAGATATATGGGACTGAAGATGCTGAGGGAAAGAAAGAGCACGGGGTGTGCAGATTGA

Network for GWHGAAEX000324

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00732.18	GMC_oxred_N	52	324	7.20E-34
PF05199.12	GMC_oxred_C	420	566	3.80E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15403	ACE, HTH	Synthesis and degradation of ketone bodies	map00072

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016614	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.730
SRP064423	SRR2545915	Juvenile tuber	0.730
SRP108465	SRR5643513	five period of Gastrodia elata	4.080
	SRR5643514	five period of Gastrodia elata	6.680
	SRR5643515	five period of Gastrodia elata	3.510
	SRR5643524	five period of Gastrodia elata	3.710
	SRR5643525	five period of Gastrodia elata	1.410
	SRR5643528	five period of Gastrodia elata	1.300
	SRR5643658	five period of Gastrodia elata	1.720
	SRR5643659	five period of Gastrodia elata	0.470
	SRR5643660	five period of Gastrodia elata	0.470
	SRR5643661	five period of Gastrodia elata	0.840
	SRR5643662	five period of Gastrodia elata	0.750
	SRR5643663	five period of Gastrodia elata	0.790
	SRR5643664	five period of Gastrodia elata	0.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.790
SRP279888	Gastro	Gastrodia elata tuber	2.59
	Juven	Juvenile tuber	0.64
	Mother_Gastro	Mother tuber of Gastrodia elata	2.52
	Mother_Juven	Mother tuber of Juvenile	1.53