Gene detail

Detail information of GWHGAAEX000327/evm.TU.scaffold_0.523

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|197106744\|ref\|YP_002132121.1\|	2.00E-179	cell division protein FtsH [Phenylobacterium zucineum HLK1]
KOG	KOG0734	0	AAA+-type ATPase containing the peptidase M41 domain
nr	gi\|672199143\|ref\|XP_008777537.1\|	0	PREDICTED: ATP-dependent zinc metalloprotease FTSH 5, mitochondrial-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8LQJ8\|FTSH5_ORYSJ	0	ATP-dependent zinc metalloprotease FTSH 5, mitochondrial (Precursor)
trEMBL	tr\|B9RRQ8\|B9RRQ8_RICCO	0	Protein YME1, putative {ECO:0000313\|EMBL:EEF45768.1}
TAIR	AT2G26140	0	FTSH protease 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	24073181	24126687	+

Transcript Sequence
>GWHTAAEX000327 AGGCGAATAAGAAAGAAATGTTCGTTGGGCATAAAAAAGTCTCATAATCCTGAGAAAAAAAACCCTGAAAATTTAGGAAAACAGTTTCGATCTTTGACAGGAATCACAGTTGATCAGGTCAAGGGCCATCCTTTAATGGATCAGGCAAGTGGGCCGCTATAAGGCAGAGACAGTGTGGGCGTTTTGGGAGAGAGAGTTCTCGAGACCCTGGCAATGGCTTGGAGGCAACTTCTTTCGCAGGTTGCAAAGAGGCAGTTGGAGCACCCTATTTTTAGCAAATTAAGAGGGAATGGGTTTGGAAAACTTCACCAAAGGAGTCAATCAAGTTATGTTGGTGCTTTTTCACGCAGACCGCATAGTTTAGATGGACCGACTGATGTCGCACTTCTTAAGGAACTTTATAGGAGTGATCCAGAAGGGGTTATTCGGCTATTTGAAAGTCAGCCATCACTACATTCCAACTCTTCTGCCCTTGCAGAGTATGTTAAAGCCTTAGTCAAGATTGACAGGCTTGACGAAAGTTCATTACTGAAAACACTTCAAAGAGGTTTGGCCAATTCTTCAAGAAATGAAGAGAGCATCAGCAATATACCAGGCTTAAAGAATCTTGGCTTAGCAACTAAAGAGGGGGTTCTTGGAACTGCCAATGCTCCTATTCACATGGTGACTGCAGAAACTAGCCATTTTAAAGAACAGTTATGGCGTACTTTTCGAACACTTGCTCTTACCTTTTTAGTGATATCTGGTGTTGGTGCTTTAATTGAGGATAGAGGAATTAGCAAAGGGCTTGGACTACATGAAGAGGTGCAGCCAAGCATGGATTCTAGTACAAAATTTAATGATGTAAAGGGCGTTGATGAGGCTAAAGCTGAATTAGAGGAAATTGTACATTATCTTCGGGATCCCAAGCGTTTCACTCGCCTAGGCGGCAAGCTTCCAAAGGGTGTTCTCCTTGTTGGTCCCCCCGGCACTGGCAAAACCATGCTGGCTAGAGCTATTGCAGGAGAAGCTGGAGTTCCCTTTTTCTCTTGCAGTGGAAGTGAGTTTGAAGAAATGTTTGTGGGTGTGGGAGCAAGGAGGGTGAGGGACCTTTTTGCTGCAGCTAAAAAGCGTTCTCCCTGTATAATTTTTATTGATGAGATTGATGCGATAGGCGGAAGTCGTAATCCAAAGGATCAGCAGTACATGAAGATGACACTGAACCAACTGCTTGTTGAGTTGGACGGCTTCAAGCAAAACGAGGGAATTATTGTCGTCGCGGCGACTAACTTTCCCGAGTCTTTGGACAAGGCGCTGGTGAGGCCCGGGCGTTTCGACCGCCATATTGTCGTTCCGAACCCAGATGTTGAAGGCAGAAGGCAGATCATGGAATCCCATATGACGAAAGTCTTAAAAGCAGATGATGTGGATCTTATGATCATAGCAAGGGGCACCCCTGGCTTCTCTGGCGCTGACCTGGCAAACCTGATCAACATGGCTGCTCTCAAGGCTGCAATGGATGGTGCCAAGGCCGTTAGCATGTCCGACCTCGAGTATGCGAAGGACAAGATCATGATGGGAAGCGAACGCAAATCTGCTGTGATCTCTGACGAGTCAAGGAAGCTGACGGCGTTCCATGAGGGAGGGCATGCACTCGTGGCCATTCACACGGACGGCGCCCTCCCTGTCCACAAGGCCACCATCGTCCCTCGGGGAATGGCCCTCGGCATGGTTGCCCAAATTCCTGACAAGGATGAGGTGAGCATCTCCCTGAGGCAAATGCTTGCAAGGCTTGACGTGTGCATGGGGGGACGTGTTGCTGAAGAGCTAATATTTGGGGAGAAGGAAGTCACATCGGGAGCTTCCAATGATCTCCAGCAGGCAACCTCCATAGCCCGTGCCATGGTGACTAAGTACGGGATGAGCAAGGAGGTGGGGGTTGTCACACACAACTACGATGATAATGGGAAGAGCATGAGTACTGAGACCAGGCTTCTGATTGAGAAAGAGGTCAGGCAGTTTCTGGAGAGGGCATATCACAATGCAAAAACCATACTGGTTGTTCATAACAGAGAGCTTCATGCACTGGCTAATGCTCTCTTGGAACAAGAAACGCTAACTGGAGCTCAGATCAAAAACTTGCTTGCCCAGGTGAATTCTCAGCAGCAGCAGCAGATGCCAGAAATTATTCCTCTGCAGCAAGCTTCTTCGACGCCTTCTCAGCCTTCAGCCGCTGCTTCTGCAGCCGCAGCTGCGGCTGCAGCTGCAGCTTCTGCAGCTGCAAAGGCTAAGGGAGTGGCACAACCAGTAGTGGGATCTTAACCACACAGAGTTTTACGGGGGCTCATTTGTTGGCATGTTTGTGTATATTAATCAAAGCTGTTGGTTCGCCTGCAGGAAAGATTTAGAACGTCACAAGAGAGAACTGAAGGGGCTTCACTGTGTAGTATGGCTGGGATTGTGTCGTTAGCTAGATTTTGGTTTCCTTCAACAGCTTGTTTTGCCAATCTTCACTCTAATGGAAGCCTTATGTACTGTTGATACGCCTTTATCGGCATGCCATTCTTCATTTTGATGATTTAGGCACTTTCTATCATACTTGAACGATATGATGGTGGGATACTGTGTTTTTTTCTTGATTTTATTCTTTTTTATTCTAGAGTTCTTACTTTTATGCACTCAATTTTTTATAATTTATATATCTTGCACCCAAACATTTGAATTTGTAAGAAAACACAATGATCTTATTATTGATTTTGATAGTAGTTCCTTTGCTCAAA

Network for GWHGAAEX000327

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	245	374	1.50E-43
PF01434.17	Peptidase_M41	436	636	2.80E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08955	YME1	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0005524	Molecular Function	ATP binding
GO:0004222	Molecular Function	metalloendopeptidase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.340
SRP064423	SRR2545915	Juvenile tuber	29.130
SRP108465	SRR5643513	five period of Gastrodia elata	24.150
	SRR5643514	five period of Gastrodia elata	27.120
	SRR5643515	five period of Gastrodia elata	27.930
	SRR5643524	five period of Gastrodia elata	28.970
	SRR5643525	five period of Gastrodia elata	38.360
	SRR5643528	five period of Gastrodia elata	38.250
	SRR5643658	five period of Gastrodia elata	39.840
	SRR5643659	five period of Gastrodia elata	24.750
	SRR5643660	five period of Gastrodia elata	26.060
	SRR5643661	five period of Gastrodia elata	25.090
	SRR5643662	five period of Gastrodia elata	27.560
	SRR5643663	five period of Gastrodia elata	26.000
	SRR5643664	five period of Gastrodia elata	27.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.050
SRP279888	Gastro	Gastrodia elata tuber	37.64
	Juven	Juvenile tuber	29.82
	Mother_Gastro	Mother tuber of Gastrodia elata	58.26
	Mother_Juven	Mother tuber of Juvenile	63.17