Detail information of GWHGAAEX000334/evm.TU.scaffold_0.537


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743913765|ref|XP_011000804.1|6.82E-48PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
Swissprottr|Q8RWA2|MED9_ARATH7.00E-44Mediator of RNA polymerase II transcription subunit 9
trEMBLtr|B9MWT2|B9MWT2_POPTR4.00E-47Uncharacterized protein {ECO:0000313|EMBL:ERP63236.1}
TAIRAT1G550803.00E-34Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142442086124424974+
Transcript Sequence

Network for GWHGAAEX000334

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07544.12Med9851552.40E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0003712Molecular Functiontranscription cofactor activity
GO:0016592Cellular Componentmediator complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.590
SRR2545915Juvenile tuber20.720
SRP108465SRR5643513five period of Gastrodia elata14.510
SRR5643514five period of Gastrodia elata18.630
SRR5643515five period of Gastrodia elata19.630
SRR5643524five period of Gastrodia elata18.460
SRR5643525five period of Gastrodia elata22.430
SRR5643528five period of Gastrodia elata32.740
SRR5643658five period of Gastrodia elata27.130
SRR5643659five period of Gastrodia elata17.740
SRR5643660five period of Gastrodia elata15.870
SRR5643661five period of Gastrodia elata15.820
SRR5643662five period of Gastrodia elata21.080
SRR5643663five period of Gastrodia elata20.180
SRR5643664five period of Gastrodia elata16.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.950
SRR6049655Rhizomagastrodiae_C368-T10_good_120.870
SRR6049656Rhizomagastrodiae_C368-T07_good_120.010
SRR6049657Rhizomagastrodiae_C368-T07_good_112.070
SRR6049658Rhizomagastrodiae_C368-T04_good_113.470
SRR6049659Rhizomagastrodiae_C368-T04_good_116.620
SRR6049660Rhizomagastrodiae_C368-T01_good_115.350
SRR6049661Rhizomagastrodiae_C368-T04_good_114.310
SRR6049662Rhizomagastrodiae_C368-T01_good_117.980
SRR6049663Rhizomagastrodiae_C368-T01_good_119.700
SRR6049664Rhizomagastrodiae_C368-T10_good_120.880
SRR6049665Rhizomagastrodiae_C368-T10_good_120.880
SRP279888GastroGastrodia elata tuber 14.82
JuvenJuvenile tuber8.89
Mother_GastroMother tuber of Gastrodia elata 30.53
Mother_JuvenMother tuber of Juvenile 17.35