Detail information of GWHGAAEX000335/evm.TU.scaffold_0.539


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|14521959|ref|NP_127436.1|0V-type ATP synthase subunit B [Pyrococcus abyssi GE5]
KOGKOG13510Vacuolar H+-ATPase V1 sector, subunit B
nrgi|743755312|ref|XP_010943806.1|0PREDICTED: V-type proton ATPase subunit B 2 [Elaeis guineensis]
Swissprottr|Q43432|VATB1_GOSHI0V-type proton ATPase subunit B 1
trEMBLtr|M0TMV8|M0TMV8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P05550_001}
TAIRAT4G385100ATPase, V1 complex, subunit B protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000142450622224536855+
Transcript Sequence

Network for GWHGAAEX000335

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02874.22ATP-synt_ab_N24902.60E-13
PF00006.24ATP-synt_ab1473771.40E-67
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02147ATPeV1B, ATP6B Metabolic pathways map01100
Oxidative phosphorylationmap00190
mTOR signaling pathwaymap04150
Phagosomemap04145
Collecting duct acid secretionmap04966
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:1902600Biological Processhydrogen ion transmembrane transport
GO:0046034Biological ProcessATP metabolic process
GO:0005524Molecular FunctionATP binding
GO:0033180Cellular Componentproton-transporting V-type ATPase, V1 domain

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms78.500
SRR2545915Juvenile tuber89.950
SRP108465SRR5643513five period of Gastrodia elata123.330
SRR5643514five period of Gastrodia elata139.320
SRR5643515five period of Gastrodia elata119.860
SRR5643524five period of Gastrodia elata135.230
SRR5643525five period of Gastrodia elata117.670
SRR5643528five period of Gastrodia elata128.110
SRR5643658five period of Gastrodia elata110.070
SRR5643659five period of Gastrodia elata113.340
SRR5643660five period of Gastrodia elata122.280
SRR5643661five period of Gastrodia elata120.330
SRR5643662five period of Gastrodia elata104.150
SRR5643663five period of Gastrodia elata118.080
SRR5643664five period of Gastrodia elata113.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1112.170
SRR6049655Rhizomagastrodiae_C368-T10_good_1171.150
SRR6049656Rhizomagastrodiae_C368-T07_good_1107.770
SRR6049657Rhizomagastrodiae_C368-T07_good_195.300
SRR6049658Rhizomagastrodiae_C368-T04_good_169.140
SRR6049659Rhizomagastrodiae_C368-T04_good_167.160
SRR6049660Rhizomagastrodiae_C368-T01_good_178.550
SRR6049661Rhizomagastrodiae_C368-T04_good_173.010
SRR6049662Rhizomagastrodiae_C368-T01_good_1117.360
SRR6049663Rhizomagastrodiae_C368-T01_good_187.430
SRR6049664Rhizomagastrodiae_C368-T10_good_1118.210
SRR6049665Rhizomagastrodiae_C368-T10_good_1118.210
SRP279888GastroGastrodia elata tuber 78.06
JuvenJuvenile tuber146.16
Mother_GastroMother tuber of Gastrodia elata 59.51
Mother_JuvenMother tuber of Juvenile 112.90