Gene detail

Detail information of GWHGAAEX000336/evm.TU.scaffold_0.540

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|339634961\|ref\|YP_004726602.1\|	2.00E-45	GTPase YqeH [Weissella koreensis KACC 15510]
KOG	KOG1249	0	Predicted GTPases
nr	gi\|743797548\|ref\|XP_010925012.1\|	0	PREDICTED: uncharacterized protein LOC105047672 [Elaeis guineensis]
Swissprot	tr\|Q6YPG5\|NOS_ORYSJ	1.00E-24	Putative nitric oxide synthase
trEMBL	tr\|W9S7E7\|W9S7E7_9ROSA	0	Uncharacterized protein yqeH {ECO:0000313\|EMBL:EXB93502.1}
TAIR	AT4G10620	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	24537864	24543407	+

Transcript Sequence
>GWHTAAEX000336 ATTTAATAAAAAAATAAATATATAATTTTGAATATTTGTTCAATTAAAAATTTAAATAATAACCGTTCACATCTTGAATTTGCTCGTTTTCAGCTGCTTAGAAGAAGCCGTCTGCCCTAATTAACGCCACAGAGCCCCTAAGCTTCTTCCCCAAAACCATATACCTACCCTAGCAAGCAAAGCAAATGCTGTGTATCGCGCGAAAATGCCGTGCCCTCCCTCTCTCATTCCATCTCTCACCCCCAAACCCACCTTTCCCTCCTCCACAGCCTCCGTCTTCTCCGACACTGCATGCCGCAGAAAACACCATCCTCTCTTTCCTCCGCAGCTTCTCGTCACAGCCATCTTCCTCCAATTCCCGTTCTTCTCCCGCGCCTTTCGTTCGCGGCGGATTCTATGACTCCGACGATTCCAGTCGCTGTCATCCTTCTCTTCCCCTCTGCCCTGGCTGCGGCGTTCACATGCAGGACTCCGATCCCTCTCTTCCCGGCTTCTTCTCCCTCCCCTCCGCAAAATCCCCAGACTACCACTCCCCCATCGCTGCTCTCCCACTCTCATTCTCTTTCGATTCCCAAGCATCTGTCTCTCTCAAATCCGGCCTCCTCCAAGAGCTTCCAGAAAACAGTCTTCGAGAGGTTTCCGGCGCTGGGAGCCGCAATTTGTTGGTTTGCGCTCGCTGCCACTCTCTCCGCCATTACGGCCGTGTGAAGCTCACTTCGGCGGAGAACCTCCTCCCGAGCTTCGACTTCGACTGCCTGATCGCTCCCAAAATGGCCTCACCGTCCGGCCCTCGCTCCGTCGTCCTCTTCGTCGTTGACGCAGCCGACTTCGAGGGCTCCTTTCCACGCAAAACTGCTCGAATCCTCTCTTCTTGCATCGAGCGCAATGCCCGCGCTTGGAAGGAGAGTAAGCCCGCAAACGTTCCAAGGATCATCCTCGTCGTCTCAAAGCTCGATCTCTTGCCTCCATCCATGTCTCCTGAGAAGATCGGGCGGTGGATGCGCCAGAGGGCCAACGACCTTGGTGCGGTGAAGCTGTCTGGGCTACATCTTGTGAGCGCCGCAAAGGATTTCGGTGTGAGGAAATTGGTCGAGCAGGTGGCTGAGTTTGCCGGGCAGAGGGGAAATGTGTGGGCTGTTGGTGCTCAAAATGCAGGCAAGTCGACTTTGATCAATGCTATGGCGAGGTGTGTTGGTAGGAAGATGGCCCAATTGACGGAGGCTCCTGTGCCTGGAACTACGCTGGGGATTGTGAGGGTGGAGGGTGTGCTTTGTGGGCAGACCAAGCTGTTTGATACTCCTGGGATACTGCATCCCTACCAGATCACAACAAGGCTGACTCCAGAGGAGCATAGATTGGTGCATATAAGAAAGGAGCTCAAGCCCATGACCTATAGAATCAAGGCAGGTCATTCAATTCATATTGGTGGGCTGATGAGGCTTGATGTGGAGAAATCTTCTGCAGATACAATATATATTACAGTGTGGGCATCACCCCTTCTACCACTTCACATGGGGAAGAAAGAAAATTCATATAAAATGATTGAAGATCACTTCGGTCGCCAATTACAGCCCCCGATAGGCGTGAATCGAATCAGTGAGCTTGGTAAATGGGTGAGAACTGAATTTAGAGTCATTGGTGACAGTTGGGAAGAGAGTAGCACCGATATTGCAACTGCTGGCCTTGGTTGGGCTGCTATCTGTCTCAAGGGAGAAGCTGTGTTGGGTGTGTGGACATATGATGGGATAGAGGTTGTATCTCGAAGTTCCTTGATTATGGAAAGAGCAAAATTATTTGAAGAAGCTGGGTTCAGTGTTTCCAAGATTGTCTCTCAAGCTGACAGGTTTTTCAGCAAGGAGAAACGAATTAAATCGGTCAATATACAGAACAAGGTAAAACCAGCAGCAAGCAGCAATTGCCGACATCTGACGCTGAGTTGAATGCTTAATATCTCCAGTGGGTAAATACGTAGAGAGAGGCTCAGTCTTGGAGATCAGAGCTTTCAGCTTGAGTCCATGCAACTTATTTCTGGTTGAGAAAGTAAGGTGCAAGTGCCAATTGAACTTCTTATATATCATGAAAATTTTTGTTTGTTTATATTCAGTTAGTTAACCTATAATACCTTGACAACCACCCTGAAGGCGAGATTTTGAACGTCTTTGTAATAATATTAGAGAAGTTCTGTGATGCCTAAAACAACTTTTAAAAGTTATACGAAATAACAGAGAATAAATAGCATATAAAATATTAATAGAGCCCACAAGCAATAGTTCATGGAATTGATTCTTATATTGAATTTAGCCCAAATTTTTATTTGTTTAAATTTTGTAGAAAATTTTTCATTATATCAAGA

Network for GWHGAAEX000336

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.22	MMR_HSR1	315	376	8.80E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.360
SRP064423	SRR2545915	Juvenile tuber	3.650
SRP108465	SRR5643513	five period of Gastrodia elata	6.470
	SRR5643514	five period of Gastrodia elata	6.640
	SRR5643515	five period of Gastrodia elata	5.580
	SRR5643524	five period of Gastrodia elata	5.740
	SRR5643525	five period of Gastrodia elata	5.270
	SRR5643528	five period of Gastrodia elata	3.450
	SRR5643658	five period of Gastrodia elata	3.270
	SRR5643659	five period of Gastrodia elata	7.570
	SRR5643660	five period of Gastrodia elata	6.880
	SRR5643661	five period of Gastrodia elata	8.150
	SRR5643662	five period of Gastrodia elata	7.910
	SRR5643663	five period of Gastrodia elata	6.360
	SRR5643664	five period of Gastrodia elata	6.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.540
SRP279888	Gastro	Gastrodia elata tuber	8.30
	Juven	Juvenile tuber	7.47
	Mother_Gastro	Mother tuber of Gastrodia elata	9.00
	Mother_Juven	Mother tuber of Juvenile	6.69