Gene detail

Detail information of GWHGAAEX000338/evm.TU.scaffold_1.1

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383788949\|ref\|YP_005473518.1\|	3.00E-51	putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
KOG	KOG1921	1.00E-121	Endonuclease III
nr	gi\|672111293\|ref\|XP_008799985.1\|	5.67E-141	PREDICTED: endonuclease III homolog 1, chloroplastic isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9SIC4\|NTH1_ARATH	3.00E-128	Endonuclease III homolog 1, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03183} (Precursor)
trEMBL	tr\|M0TWU0\|M0TWU0_MUSAM	5.00E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P02330_001}
TAIR	AT2G31450	1.00E-121	DNA glycosylase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	29942	69776	-

Transcript Sequence
>GWHTAAEX000338 CCCCGATATAAATTTCTCTTCGTTTTAACTTCCGATGGTCTGCATGTTGCAAAAAAGCCAGGCCTTCCTCTACAGTGTCGTCCTGCTCGGAGTTTCTCCGTTTACGCTTCTCTTTACCGGAAAAGCTTTTCTTATGTCTACCTCTAAATCCACGTCGCGTCGACCACGCTCTTCAAAAACCCTAACCTCAGTTCCAGTTTCTGATATCGCAGCAAAGCCTTCTGTTCGAGCTCGTGTGAGAAGAAGCATGGCAATGAGGGCAGCCGAGTTGTCTATTGATGCTCCCAGCGGAGAAGGCCCCGGTCCTCAACCTGCTAGGTTGCCAGATATAGAAGAGTTTGCTTATAAACCAGTCAAGGGATGTGCAAGTTCAAGAACAGGTACTGCTGTTATTCTTGATACAAAAAGGATGAAGCCCATTTCCATTGAGTCAAAAGTGGAAATGCCTTTAAATTGGGAGATAGTACTTGACGGGATTAAGAAAATGAGGTTTTCAGGAAATGCTCCTGTAGATTCTATGGGCTGTGAGAAGGCTGGTAGATTCCTTCCTCCAAAGGAAAGAAGATTTGCAGTTTTAATGTCTTCTCTGTTGTCCAGCCAAACCAAAGATGAAGTTAACCATGGTGCTATGCAACGTCTTTCTGAGAAAGGCCTAATCGATGCTGCTGCAATTGCTGAAACTGATGAAGCAAATATTGCGAAATTAATCTATCCAGTTGGATTTTACTCGAGGAAAGCCAAGTATATGAAGCAAGTAGCTGAAATTTGTCTTTCTAAGTTTGGAGGAGATATTCCAAATTCCTTTGATGACCTTCTTTCACTTCCCGGAATTGGTCCTAAAATGGCTCATTTGGTGATGAATGTTGCATGGAGTAATGTGCAAGGAATATGTGTCGACACTCATGTGCATCGTATTTGTAATCGCTTGGGATGGGTATTGCGATCAGGCACAATGCAGAAAACACGTTCTCCTGAAGAAACAAGAGCTTTTTTGCAGAAGTGGCTTCCAAAAAATGAATGGGATCCTATTAATCCACTTCTGGTTGGCTTTGGGCAAACTGTGTGCACTCCTCTCAGGCCGAAATGCCACATCTGCTCTGTTAGTAGCCTCTGTCCATCTGCTTTCAAAGAGTCACCAAACAATGCACAAAAGCCTGCAAAGAAGCTAAAAGCCAAGTGAACAGAGAGTTTTTCATTATGCATACGCTGCTAACTCCGGAGAACTTTATAGACTTACGATTGAAGTGTCACTTTCTGCCTTTTCCGAACTTCTTCCTTTTAGGGTGGGAATTGGTAAAAATATTTTGTTTGGGTTGGTTGGTTCTTTTTGTTTTGGCCAAAATATTATTTCGAAAATACTATATTTACACAAATATACACAGAAAAAGCATTTAGAACTAATAGAAACCTTTTTTTTATTCTTGCACATGGGCTGGGTGTGGTGGCAGTTGTAGCCCACATCTAAAATAGGGTGTAGCAAAAAATATAGGTAAAATGTGATTGCAATTCTCTAAAAAGAATTGAATAGATGTCTCAATGATTAAAATCTAAGCCATTGATGAATGGGAGAGGTTTGGATTGGAACACCAAGTTGAAGCTTTCCTAGATTGAGGTGAGACACTAATCTATCTTTGTTATAGCAAGAGATTTTAACCTTGGTGGAAGAAATGCTAATACCTATATCATGACTGATTGATTGATGAAGCTGCTATTTTGGTGAGAAGAATGACCTTTCTTGGGTACACTTAAGGCTAGAGAAACAATACAATGAAAATTTTGAGGAATGGTTATAAATGCTTTTTTTCAATAACAAGAAGATAAGGTACAAATAAATGAGTGACCTAATTAAAAGAATGCAAGGTTAAAAAGGTTAAAAGATACTTTAGTACTTTAATGTTATACTAGTCTTATAATATTTTAGAAGATAAAATGCAATGATAAC

Network for GWHGAAEX000338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00730.24	HhH-GPD	183	324	3.30E-21
PF00633.22	HHH	248	276	5.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10773	NTH	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006284	Biological Process	base-excision repair
GO:0006281	Biological Process	DNA repair
GO:0006285	Biological Process	base-excision repair, AP site formation
GO:0003906	Molecular Function	DNA-(apurinic or apyrimidinic site) lyase activity
GO:0003677	Molecular Function	DNA binding
GO:0019104	Molecular Function	DNA N-glycosylase activity
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding
GO:0003824	Molecular Function	catalytic activity
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.370
SRP064423	SRR2545915	Juvenile tuber	1.470
SRP108465	SRR5643513	five period of Gastrodia elata	0.770
	SRR5643514	five period of Gastrodia elata	2.100
	SRR5643515	five period of Gastrodia elata	1.030
	SRR5643524	five period of Gastrodia elata	1.830
	SRR5643525	five period of Gastrodia elata	0.390
	SRR5643528	five period of Gastrodia elata	0.210
	SRR5643658	five period of Gastrodia elata	0.220
	SRR5643659	five period of Gastrodia elata	0.230
	SRR5643660	five period of Gastrodia elata	0.110
	SRR5643661	five period of Gastrodia elata	0.070
	SRR5643662	five period of Gastrodia elata	0.040
	SRR5643663	five period of Gastrodia elata	0.060
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.800
SRP279888	Gastro	Gastrodia elata tuber	0.19
	Juven	Juvenile tuber	1.12
	Mother_Gastro	Mother tuber of Gastrodia elata	0.10
	Mother_Juven	Mother tuber of Juvenile	0.57