Detail information of GWHGAAEX000340/evm.TU.scaffold_1.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392403592|ref|YP_006440204.1|9.00E-16ApaG domain protein [Turneriella parva DSM 21527]
KOGKOG44087.00E-146Putative Mg2+ and Co2+ transporter CorD
nrgi|672203287|ref|XP_008778607.1|0PREDICTED: F-box protein SKIP16 [Phoenix dactylifera]
Swissprottr|Q9LND7|SKI16_ARATH6.00E-152F-box protein SKIP16
trEMBLtr|M0RZJ7|M0RZJ7_MUSAM2.00E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P13390_001}
TAIRAT1G061107.00E-146SKP1/ASK-interacting protein 16

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000008288437321432-
Transcript Sequence

Network for GWHGAAEX000340

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04379.13DUF5253464341.80E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.410
SRR2545915Juvenile tuber34.960
SRP108465SRR5643513five period of Gastrodia elata21.690
SRR5643514five period of Gastrodia elata21.330
SRR5643515five period of Gastrodia elata22.290
SRR5643524five period of Gastrodia elata22.240
SRR5643525five period of Gastrodia elata22.400
SRR5643528five period of Gastrodia elata20.490
SRR5643658five period of Gastrodia elata20.860
SRR5643659five period of Gastrodia elata21.310
SRR5643660five period of Gastrodia elata25.010
SRR5643661five period of Gastrodia elata23.470
SRR5643662five period of Gastrodia elata25.640
SRR5643663five period of Gastrodia elata23.270
SRR5643664five period of Gastrodia elata25.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.750
SRR6049655Rhizomagastrodiae_C368-T10_good_119.210
SRR6049656Rhizomagastrodiae_C368-T07_good_125.140
SRR6049657Rhizomagastrodiae_C368-T07_good_133.040
SRR6049658Rhizomagastrodiae_C368-T04_good_135.260
SRR6049659Rhizomagastrodiae_C368-T04_good_140.600
SRR6049660Rhizomagastrodiae_C368-T01_good_135.840
SRR6049661Rhizomagastrodiae_C368-T04_good_133.950
SRR6049662Rhizomagastrodiae_C368-T01_good_123.530
SRR6049663Rhizomagastrodiae_C368-T01_good_127.790
SRR6049664Rhizomagastrodiae_C368-T10_good_121.270
SRR6049665Rhizomagastrodiae_C368-T10_good_121.270
SRP279888GastroGastrodia elata tuber 31.30
JuvenJuvenile tuber47.33
Mother_GastroMother tuber of Gastrodia elata 33.85
Mother_JuvenMother tuber of Juvenile 34.14