Detail information of GWHGAAEX000341/evm.TU.scaffold_1.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297621203|ref|YP_003709340.1| | 3.00E-27 | serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044] |
| KOG | KOG0698 | 3.00E-88 | Serine/threonine protein phosphatase |
| nr | gi|357135769|ref|XP_003569481.1| | 7.18E-124 | PREDICTED: probable protein phosphatase 2C 8 [Brachypodium distachyon] |
| Swissprot | tr|Q5SN75|P2C08_ORYSJ | 2.00E-124 | Probable protein phosphatase 2C 8 |
| trEMBL | tr|I1HQ03|I1HQ03_BRADI | 3.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G45470.1} |
| TAIR | AT2G29380 | 3.00E-88 | highly ABA-induced PP2C gene 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 450633 | 459934 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000341
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00481.20 | PP2C | 64 | 330 | 5.40E-68 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14497 | PP2C | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0043169 | Molecular Function | cation binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.230 |
| SRR2545915 | Juvenile tuber | 35.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.580 |
| SRR5643514 | five period of Gastrodia elata | 41.210 | |
| SRR5643515 | five period of Gastrodia elata | 41.920 | |
| SRR5643524 | five period of Gastrodia elata | 38.120 | |
| SRR5643525 | five period of Gastrodia elata | 61.540 | |
| SRR5643528 | five period of Gastrodia elata | 77.110 | |
| SRR5643658 | five period of Gastrodia elata | 118.600 | |
| SRR5643659 | five period of Gastrodia elata | 31.940 | |
| SRR5643660 | five period of Gastrodia elata | 36.080 | |
| SRR5643661 | five period of Gastrodia elata | 54.670 | |
| SRR5643662 | five period of Gastrodia elata | 27.160 | |
| SRR5643663 | five period of Gastrodia elata | 24.210 | |
| SRR5643664 | five period of Gastrodia elata | 51.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.87 |
| Juven | Juvenile tuber | 38.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 94.56 | |
| Mother_Juven | Mother tuber of Juvenile | 97.29 |